Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   HPY13_RS05105 Genome accession   NZ_CP053796
Coordinates   1100529..1101533 (+) Length   334 a.a.
NCBI ID   WP_000568491.1    Uniprot ID   Q9KR02
Organism   Vibrio cholerae strain SL4G     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1095529..1106533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY13_RS05080 (HPY13_05080) lpxH 1096356..1097096 (-) 741 WP_108243756.1 UDP-2,3-diacylglucosamine diphosphatase -
  HPY13_RS05085 (HPY13_05085) - 1097137..1097631 (-) 495 WP_000631302.1 peptidylprolyl isomerase -
  HPY13_RS05090 (HPY13_05090) cysS 1097777..1099156 (+) 1380 WP_094391851.1 cysteine--tRNA ligase -
  HPY13_RS05095 (HPY13_05095) ruvC 1099244..1099765 (+) 522 WP_000111359.1 crossover junction endodeoxyribonuclease RuvC -
  HPY13_RS05100 (HPY13_05100) ruvA 1099859..1100473 (+) 615 WP_094391850.1 Holliday junction branch migration protein RuvA Machinery gene
  HPY13_RS05105 (HPY13_05105) ruvB 1100529..1101533 (+) 1005 WP_000568491.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  HPY13_RS05110 (HPY13_05110) cydA 1101992..1103578 (+) 1587 WP_000568053.1 cytochrome ubiquinol oxidase subunit I -
  HPY13_RS05115 (HPY13_05115) cydB 1103596..1104732 (+) 1137 WP_000460767.1 cytochrome d ubiquinol oxidase subunit II -
  HPY13_RS05120 (HPY13_05120) cydX 1104745..1104852 (+) 108 WP_000270285.1 cytochrome bd-I oxidase subunit CydX -
  HPY13_RS05125 (HPY13_05125) ybgE 1104845..1105162 (+) 318 WP_046126878.1 cyd operon protein YbgE -
  HPY13_RS05130 (HPY13_05130) ybgC 1105331..1105738 (+) 408 WP_001091290.1 tol-pal system-associated acyl-CoA thioesterase -
  HPY13_RS05135 (HPY13_05135) tolQ 1105728..1106411 (+) 684 WP_000123083.1 protein TolQ -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37298.75 Da        Isoelectric Point: 5.0460

>NTDB_id=394794 HPY13_RS05105 WP_000568491.1 1100529..1101533(+) (ruvB) [Vibrio cholerae strain SL4G]
MIEADRLIAPISNHFKDEEVIDRAIRPKKLADYQGQDHVRDQMEIFIQAAQMRQEALDHLLIFGPPGLGKTTLANIVANE
MGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLI
GATTRAGSLTSPLRDRFGIVQRLEYYKVADLQHIVQRSAQCLGLSMDSEGALEVARRARGTPRIANRLLRRVRDYAEVKG
DGHICAQTADRALNMLDVDHQGFDYMDRKLLLAIMEKFSGGPVGIDNLAAAIGEEKDTIEDVLEPFLIQQGYLQRTPRGR
IATDRAYLHFGIEK

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=394794 HPY13_RS05105 WP_000568491.1 1100529..1101533(+) (ruvB) [Vibrio cholerae strain SL4G]
ATGATAGAAGCCGATCGTTTAATTGCTCCAATCAGCAACCACTTCAAAGATGAGGAAGTGATTGATCGAGCGATTCGTCC
CAAAAAGCTTGCCGATTACCAAGGTCAAGATCATGTTCGTGATCAGATGGAAATCTTCATTCAAGCGGCACAAATGCGCC
AAGAAGCCTTAGACCATCTGCTGATTTTCGGGCCTCCGGGCTTGGGTAAAACCACCTTGGCCAACATAGTCGCTAACGAA
ATGGGCGTGAATATTCGTACTACTTCAGGTCCTGTATTGGAAAAAGCGGGAGATTTAGCGGCACTGTTAACCAATCTTGA
AGAAAACGATGTGCTGTTTATTGATGAAATCCATCGTTTGAGCCCAATGGTTGAGGAAGTACTGTATCCCGCTATGGAAG
ATTACCAACTCGATATCATGATTGGTGAAGGCCCAGCTGCACGCTCAATCAAAATCGATCTCCCTCCTTTTACTTTAATT
GGAGCCACCACACGTGCAGGCTCGCTGACTTCACCACTGCGTGACCGATTTGGGATTGTGCAACGATTGGAGTATTACAA
AGTCGCCGATTTACAACACATAGTACAACGTAGTGCGCAGTGTCTCGGTCTTTCGATGGATAGTGAGGGCGCTCTTGAAG
TGGCTCGCCGTGCACGTGGAACCCCGCGGATTGCCAATCGCCTGCTGCGCCGGGTGCGAGATTATGCCGAAGTGAAAGGG
GATGGGCACATTTGTGCGCAAACCGCTGACAGGGCACTCAATATGCTTGATGTTGACCATCAAGGCTTTGATTACATGGA
TAGAAAGCTGCTGTTAGCAATAATGGAAAAGTTTTCAGGTGGCCCAGTCGGAATCGATAACCTTGCGGCAGCTATTGGCG
AAGAGAAAGATACGATAGAAGATGTTCTTGAGCCATTTCTCATTCAGCAGGGTTATTTACAACGTACACCACGCGGTCGT
ATCGCGACAGATCGCGCTTATTTGCATTTCGGTATTGAAAAATAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(25-183)

RuvB C-terminal winged helix domain (WHD_RuvB)

(261-330)

RuvB AAA lid domain (AAA_lid_4)

(186-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KR02

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

61.682

96.108

0.593
  ruvB Streptococcus pneumoniae TIGR4

59.937

94.91

0.569
  ruvB Streptococcus pneumoniae R6

59.937

94.91

0.569
  ruvB Streptococcus pneumoniae D39

59.937

94.91

0.569
  ruvB Synechocystis sp. PCC 6803

55.663

92.515

0.515
  ruvB Helicobacter pylori 26695

54.276

91.018

0.494