Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   HPY13_RS05100 Genome accession   NZ_CP053796
Coordinates   1099859..1100473 (+) Length   204 a.a.
NCBI ID   WP_094391850.1    Uniprot ID   -
Organism   Vibrio cholerae strain SL4G     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1094859..1105473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY13_RS05075 (HPY13_05075) - 1095046..1096260 (-) 1215 WP_001903180.1 EAL and HDOD domain-containing protein -
  HPY13_RS05080 (HPY13_05080) lpxH 1096356..1097096 (-) 741 WP_108243756.1 UDP-2,3-diacylglucosamine diphosphatase -
  HPY13_RS05085 (HPY13_05085) - 1097137..1097631 (-) 495 WP_000631302.1 peptidylprolyl isomerase -
  HPY13_RS05090 (HPY13_05090) cysS 1097777..1099156 (+) 1380 WP_094391851.1 cysteine--tRNA ligase -
  HPY13_RS05095 (HPY13_05095) ruvC 1099244..1099765 (+) 522 WP_000111359.1 crossover junction endodeoxyribonuclease RuvC -
  HPY13_RS05100 (HPY13_05100) ruvA 1099859..1100473 (+) 615 WP_094391850.1 Holliday junction branch migration protein RuvA Machinery gene
  HPY13_RS05105 (HPY13_05105) ruvB 1100529..1101533 (+) 1005 WP_000568491.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  HPY13_RS05110 (HPY13_05110) cydA 1101992..1103578 (+) 1587 WP_000568053.1 cytochrome ubiquinol oxidase subunit I -
  HPY13_RS05115 (HPY13_05115) cydB 1103596..1104732 (+) 1137 WP_000460767.1 cytochrome d ubiquinol oxidase subunit II -
  HPY13_RS05120 (HPY13_05120) cydX 1104745..1104852 (+) 108 WP_000270285.1 cytochrome bd-I oxidase subunit CydX -
  HPY13_RS05125 (HPY13_05125) ybgE 1104845..1105162 (+) 318 WP_046126878.1 cyd operon protein YbgE -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22089.78 Da        Isoelectric Point: 5.3641

>NTDB_id=394793 HPY13_RS05100 WP_094391850.1 1099859..1100473(+) (ruvA) [Vibrio cholerae strain SL4G]
MIGRLRGTLIEKLPPQILIEIGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLLYGFNTVNERALFREVIKANG
VGPKMGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKTAERLVVEMKDRLKGWGAGDLFTPATDAAPVDSTPVIAQNA
QEEAMSALLALGYKHPQASKAVSQVAKAGMSSEELIREALKSMV

Nucleotide


Download         Length: 615 bp        

>NTDB_id=394793 HPY13_RS05100 WP_094391850.1 1099859..1100473(+) (ruvA) [Vibrio cholerae strain SL4G]
GTGATTGGACGTCTTCGCGGTACGCTGATTGAAAAACTCCCGCCACAAATTTTGATTGAAATCGGCGGGATTGGCTATGA
AGTACAAATGCCGATGAGTTGTATTTACGAACTTCCCAATATTGGTGAAGAAGCCATCATCTATACTCATTTTGTTGTGC
GGGAAGATGCGCAGCTATTGTACGGATTTAACACGGTCAATGAGCGAGCACTCTTTCGCGAGGTGATCAAAGCTAATGGG
GTGGGGCCCAAAATGGGGCTCGCAATACTTTCTGGCATGACAGCCAATCAGTTTGTGACTTGTGTGGAAAAAGAAGATAT
CTCTACCCTCATTAAATTACCGGGAGTCGGGAAGAAGACGGCTGAGCGATTGGTGGTGGAAATGAAAGATCGCCTGAAAG
GATGGGGAGCGGGTGATCTCTTTACTCCTGCAACCGATGCGGCACCTGTCGATTCTACGCCCGTGATTGCCCAAAATGCT
CAGGAAGAAGCCATGAGCGCGCTATTGGCGCTAGGTTACAAGCACCCTCAAGCTTCCAAAGCGGTATCGCAAGTGGCTAA
AGCAGGAATGAGCAGTGAAGAGTTGATCCGTGAAGCGCTCAAATCTATGGTGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(159-203)

Helix-hairpin-helix domain (HHH_5)

(72-130)

RuvA N terminal domain (RuvA_N)

(1-62)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

36.098

100

0.363