Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PSESU_RS00720 Genome accession   NC_014924
Coordinates   164623..166149 (-) Length   508 a.a.
NCBI ID   WP_013533836.1    Uniprot ID   -
Organism   Pseudoxanthomonas suwonensis 11-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 159623..171149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSESU_RS00705 (Psesu_0141) - 160311..162878 (+) 2568 WP_013533833.1 putative peptide modification system cyclase -
  PSESU_RS00710 (Psesu_0142) - 162875..163180 (-) 306 WP_013533834.1 NHLP-related RiPP peptide -
  PSESU_RS00715 (Psesu_0143) - 163268..164449 (+) 1182 WP_013533835.1 putative peptide maturation dehydrogenase -
  PSESU_RS00720 (Psesu_0144) comM 164623..166149 (-) 1527 WP_013533836.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PSESU_RS00725 (Psesu_0145) - 166156..166431 (-) 276 WP_013533837.1 accessory factor UbiK family protein -
  PSESU_RS00730 (Psesu_0146) - 166624..166962 (+) 339 WP_013533838.1 P-II family nitrogen regulator -
  PSESU_RS00735 (Psesu_0147) - 166994..167662 (-) 669 WP_013533839.1 phosphotransferase -
  PSESU_RS00740 (Psesu_0148) speE 167925..168776 (-) 852 WP_013533840.1 polyamine aminopropyltransferase -
  PSESU_RS00745 (Psesu_0149) speA 168929..170818 (+) 1890 WP_013533841.1 arginine decarboxylase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 52903.69 Da        Isoelectric Point: 7.9457

>NTDB_id=39477 PSESU_RS00720 WP_013533836.1 164623..166149(-) (comM) [Pseudoxanthomonas suwonensis 11-1]
MGLALVHSRARAGVAAPAVQVEVHLSGGLPCTQIVGLPAAAVRESRDRVRAAILCAQFEYPQRRITINLAPADLPKDGGR
FDLPIALGILAASGQIDRDALAGCEFLGELGLTGELRPVDGILPAVLAAARAGRRLVVPAASAAEAALAREAEAYAARTL
LETCAGLGGQARLPSVGEASGEAAAETLRPAPAPPDLAAVRGQLQARRALEIAAAGGHHLLMSGPPGCGKTLLASCLPGL
LPEASEAEALETAAVHSISGQGLDPSRWRQRPLRAPHHGASPVALAGGGSPPRPGEISLAHNGVLFLDELPEWSRAALEV
LREPLESGRITISRAGRSAEFPARFQLVAALNPCPCGFAGDPSARCRCTPDMVARYWGRLSGPLLDRIDLHLSMARLPPA
QLRADAPPSESSVGVRARVEAARARQEARGSGLNARLDATGLAACCRLADAEQALLEQAAERLQLTARSMHRVLRVARTI
ADLDGSEGIGRPHLAEALGYRAPLLLRD

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=39477 PSESU_RS00720 WP_013533836.1 164623..166149(-) (comM) [Pseudoxanthomonas suwonensis 11-1]
ATGGGCCTGGCCCTGGTGCACAGTCGCGCCCGTGCGGGCGTGGCCGCTCCGGCCGTGCAGGTCGAGGTGCATCTCTCCGG
CGGCCTGCCCTGCACCCAGATCGTCGGCCTGCCTGCCGCGGCGGTACGCGAATCCCGTGACCGGGTACGCGCCGCCATCC
TCTGCGCGCAGTTCGAGTACCCGCAGCGGCGCATCACCATCAACCTTGCGCCCGCCGACCTGCCCAAGGACGGCGGCCGC
TTCGACCTGCCGATCGCACTGGGCATCCTCGCCGCGTCCGGACAGATCGACCGCGACGCGCTGGCCGGCTGCGAGTTCCT
TGGCGAGCTCGGCCTGACCGGGGAGCTGCGGCCGGTGGACGGCATCCTGCCGGCGGTCCTGGCCGCCGCGCGCGCCGGCC
GCAGGCTGGTGGTCCCGGCTGCCAGTGCGGCCGAGGCTGCACTGGCGCGCGAGGCCGAGGCCTATGCCGCCCGCACCCTG
CTGGAGACCTGCGCCGGGCTCGGCGGACAGGCGCGCCTGCCCAGCGTCGGCGAGGCTTCCGGCGAGGCCGCGGCCGAAAC
CCTCCGCCCCGCGCCAGCGCCGCCCGACCTGGCCGCGGTGCGCGGCCAGCTGCAGGCGCGGCGGGCGCTGGAGATCGCCG
CGGCCGGTGGACACCATCTGCTGATGAGCGGTCCCCCGGGTTGCGGCAAGACCCTGCTGGCCTCCTGCCTGCCCGGACTG
CTGCCGGAGGCCAGCGAGGCCGAGGCGCTGGAAACCGCGGCAGTGCACTCGATCAGCGGCCAGGGCCTGGACCCGTCACG
CTGGCGCCAGCGCCCGTTGCGCGCGCCGCACCATGGCGCCAGCCCGGTCGCCCTCGCCGGCGGCGGCAGTCCGCCGCGGC
CGGGCGAGATCTCGCTGGCGCACAACGGGGTACTTTTCCTCGACGAGCTGCCCGAATGGAGCCGCGCGGCCCTGGAAGTG
CTGCGCGAGCCACTGGAGTCCGGGCGCATCACGATCTCCCGGGCCGGACGCAGCGCGGAGTTCCCGGCGCGGTTCCAGCT
CGTGGCTGCGTTGAACCCGTGCCCCTGCGGCTTCGCGGGCGATCCTTCGGCGCGCTGCCGCTGCACCCCGGACATGGTCG
CGCGTTACTGGGGCCGGCTGTCCGGTCCGCTGCTGGATCGCATCGACCTGCATCTTTCGATGGCCCGCCTGCCGCCGGCA
CAGCTGCGCGCCGATGCGCCGCCTTCCGAATCCAGCGTTGGAGTACGTGCGCGGGTGGAGGCGGCGCGGGCACGGCAGGA
GGCACGCGGCAGCGGACTCAACGCGCGGCTCGATGCCACCGGACTTGCCGCCTGCTGCCGGCTGGCGGATGCCGAGCAGG
CCCTGCTCGAGCAGGCCGCCGAGCGACTGCAGCTGACCGCGCGCAGCATGCACCGTGTGCTGCGGGTGGCGCGCACCATC
GCCGACCTCGACGGCAGCGAGGGGATCGGCCGGCCGCACCTGGCCGAGGCACTGGGCTACCGCGCGCCGCTGCTGCTGCG
CGACTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(196-399)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(410-501)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.183

98.819

0.535
  comM Vibrio campbellii strain DS40M4

53.785

98.819

0.531
  comM Glaesserella parasuis strain SC1401

52.778

99.213

0.524
  comM Haemophilus influenzae Rd KW20

52.485

99.016

0.52
  comM Legionella pneumophila str. Paris

49.225

100

0.5
  comM Legionella pneumophila strain ERS1305867

49.225

100

0.5
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.885

99.606

0.427

Multiple sequence alignment