Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | HPY12_RS04765 | Genome accession | NZ_CP053794 |
| Coordinates | 1015040..1015351 (+) | Length | 103 a.a. |
| NCBI ID | WP_001166105.1 | Uniprot ID | Q9KQT1 |
| Organism | Vibrio cholerae strain W10G | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1010040..1020351
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPY12_RS04750 (HPY12_04755) | lon | 1010077..1012437 (+) | 2361 | WP_001047611.1 | endopeptidase La | - |
| HPY12_RS04755 (HPY12_04760) | - | 1012621..1012893 (+) | 273 | WP_001044516.1 | HU family DNA-binding protein | - |
| HPY12_RS04760 (HPY12_04765) | ppiD | 1013046..1014905 (+) | 1860 | WP_175234155.1 | peptidylprolyl isomerase | - |
| HPY12_RS04765 (HPY12_04770) | comEA | 1015040..1015351 (+) | 312 | WP_001166105.1 | ComEA family DNA-binding protein | Machinery gene |
| HPY12_RS04770 (HPY12_04775) | cmk | 1015534..1016211 (+) | 678 | WP_000094752.1 | (d)CMP kinase | - |
| HPY12_RS04775 (HPY12_04780) | rpsA | 1016320..1017990 (+) | 1671 | WP_000140318.1 | 30S ribosomal protein S1 | - |
| HPY12_RS04780 (HPY12_04785) | ihfB | 1018279..1018557 (+) | 279 | WP_000167341.1 | integration host factor subunit beta | - |
| HPY12_RS04785 (HPY12_04790) | - | 1018696..1018977 (+) | 282 | WP_000691492.1 | LapA family protein | - |
| HPY12_RS04790 (HPY12_04795) | lapB | 1018989..1020158 (+) | 1170 | WP_000889971.1 | lipopolysaccharide assembly protein LapB | - |
Sequence
Protein
Download Length: 103 a.a. Molecular weight: 10966.78 Da Isoelectric Point: 5.0506
>NTDB_id=394704 HPY12_RS04765 WP_001166105.1 1015040..1015351(+) (comEA) [Vibrio cholerae strain W10G]
MQIKTKIVTLFLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFTHI
DDLTNVKGIGEATVRNNAARILL
MQIKTKIVTLFLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFTHI
DDLTNVKGIGEATVRNNAARILL
Nucleotide
Download Length: 312 bp
>NTDB_id=394704 HPY12_RS04765 WP_001166105.1 1015040..1015351(+) (comEA) [Vibrio cholerae strain W10G]
ATGCAAATCAAAACCAAAATAGTGACACTGTTTCTTTCTCTCTGCCTGCCGACATTACCGTTACTGGCCAATGCCGAGGA
AACGGCACCCGCTGCGCAGGTAGAAGAAGGTATTGTGATCACTGTCAACATTAATACCGCTTCTGCAGAAGAGCTGGCGA
CGTTACTCAAAGGCATCGGGCTTAAGAAAGCTCAGGCCATTGTCGATTATCGAGAAGCCAACGGTCCTTTTACTCATATC
GATGATCTGACGAATGTGAAAGGGATTGGTGAAGCGACAGTGCGCAACAATGCCGCAAGGATCTTGTTATAA
ATGCAAATCAAAACCAAAATAGTGACACTGTTTCTTTCTCTCTGCCTGCCGACATTACCGTTACTGGCCAATGCCGAGGA
AACGGCACCCGCTGCGCAGGTAGAAGAAGGTATTGTGATCACTGTCAACATTAATACCGCTTCTGCAGAAGAGCTGGCGA
CGTTACTCAAAGGCATCGGGCTTAAGAAAGCTCAGGCCATTGTCGATTATCGAGAAGCCAACGGTCCTTTTACTCATATC
GATGATCTGACGAATGTGAAAGGGATTGGTGAAGCGACAGTGCGCAACAATGCCGCAAGGATCTTGTTATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio cholerae C6706 |
100 |
100 |
1 |
| comEA | Vibrio cholerae strain A1552 |
100 |
100 |
1 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
62.766 |
91.262 |
0.573 |
| comEA | Vibrio campbellii strain DS40M4 |
58.333 |
93.204 |
0.544 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
40.541 |
100 |
0.437 |