Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GEA60_RS22995 Genome accession   NZ_CP045487
Coordinates   4846450..4847970 (+) Length   506 a.a.
NCBI ID   WP_203461688.1    Uniprot ID   -
Organism   Enterobacter cloacae strain 14240244101     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4841450..4852970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GEA60_RS22970 ilvE 4843016..4843945 (-) 930 WP_013099287.1 branched-chain-amino-acid transaminase -
  GEA60_RS22975 ilvM 4843964..4844227 (-) 264 WP_006179206.1 acetolactate synthase 2 small subunit -
  GEA60_RS22980 ilvG 4844224..4845870 (-) 1647 WP_203461687.1 acetolactate synthase 2 catalytic subunit -
  GEA60_RS22985 ilvX 4845873..4845923 (-) 51 WP_102046757.1 peptide IlvX -
  GEA60_RS22990 ilvL 4846010..4846108 (-) 99 WP_001311244.1 ilv operon leader peptide -
  GEA60_RS22995 comM 4846450..4847970 (+) 1521 WP_203461688.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GEA60_RS23000 - 4848003..4848341 (-) 339 WP_013099290.1 DUF413 domain-containing protein -
  GEA60_RS23005 hdfR 4848460..4849281 (+) 822 WP_014833736.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55100.04 Da        Isoelectric Point: 6.9164

>NTDB_id=394561 GEA60_RS22995 WP_203461688.1 4846450..4847970(+) (comM) [Enterobacter cloacae strain 14240244101]
MSLSVVYTRAAIGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTARLGSYEFIGELALTGALRGVPGAISGALEAIHAGRQIIVANENASEVSLIAEKGCLVAGHL
QEVCAYLEGRHELSEPEETEDILPESPDDLSDIIGQVQGKRTLEITAAGGHNLLLIGPPGTGKTMLASRLNGLLPPLNNH
EALESAAIYSLVSSASLHKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPAQFQLVAAMNPSPSGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLSQTTIHG
ESTAKVRERVIASQARQYARQHKLNARLDNAEIRQFCHLKAEDACWLEETLTRFGLSIRAWQRLLKVARTIADVEGDPEI
ERHHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=394561 GEA60_RS22995 WP_203461688.1 4846450..4847970(+) (comM) [Enterobacter cloacae strain 14240244101]
ATGTCACTGTCAGTTGTTTATACGCGCGCGGCTATCGGAGTAAAGGCACCGCTTATTTCTGTGGAGGTTCATCTGAGTAA
TGGGCTCCCTGGGCTAACACTTGTCGGCTTGCCAGAAACCACGGTCAAAGAAGCCAGGGATCGGGTACGCAGCGCAATTA
TCAATAGCGGTTATACCTTCCCTGCAAAGAAGATCACAATCAATCTTGCTCCCGCAGATCTGCCCAAGGAGGGCGGACGA
TATGATTTACCTATCGCTATTGCGCTTCTCGCAGCCTCTGAGCAGCTCAACACAGCGAGGCTAGGCTCGTACGAGTTCAT
TGGCGAACTGGCGCTTACAGGCGCGTTAAGAGGCGTTCCTGGCGCCATCTCTGGTGCGCTGGAAGCCATTCATGCCGGTC
GACAAATTATTGTAGCCAATGAAAATGCCTCAGAAGTGAGCCTGATTGCGGAGAAAGGTTGCCTGGTCGCGGGGCATTTG
CAGGAGGTCTGCGCATACCTTGAAGGCCGACATGAGCTGTCTGAACCGGAAGAAACGGAAGATATCCTGCCAGAAAGTCC
GGATGACCTCAGCGATATTATCGGGCAGGTGCAGGGGAAGCGGACGCTGGAGATCACCGCTGCCGGGGGACATAACCTGT
TGCTGATAGGGCCGCCGGGAACGGGGAAAACCATGCTGGCGAGCAGGCTGAACGGGTTATTGCCGCCACTCAATAACCAT
GAGGCACTTGAAAGCGCTGCGATATACAGCCTGGTGAGTTCTGCCTCGTTGCACAAACAGTGGCGACGTCGGCCTTTTCG
CTCTCCACATCATAGTGCCTCCCTGACGGCCATGGTCGGCGGTGGCTCCATTCCGGGGCCGGGAGAGATCTCGCTGGCAC
ACAATGGCATCCTGTTCCTTGATGAACTGCCTGAGTTTGAACGCCGCGTACTGGATGCCCTGCGGGAACCCATCGAATCG
GGAGAAATCCATATCTCCCGCACGCGCGCTAAAATAAGCTACCCGGCACAATTCCAGCTGGTTGCCGCCATGAATCCCAG
CCCATCAGGCCATTATCAGGGGAATCATAATCGCTGCACGCCTGAGCAAACGCTGCGCTATCTGGGAAAGCTGTCAGGCC
CTTTCCTCGATCGTTTTGATTTATCCCTGGAGATCCCCTTACCTCCCCCTGGTTTACTCAGTCAGACAACGATACACGGT
GAGAGCACAGCGAAGGTTCGCGAACGGGTCATCGCCTCACAGGCCCGACAGTACGCTCGTCAACATAAGCTGAATGCGCG
TCTGGATAATGCTGAGATTCGGCAGTTTTGCCATCTTAAGGCTGAGGATGCCTGCTGGCTTGAGGAGACATTGACGCGAT
TTGGGCTCTCGATCCGTGCATGGCAGCGCCTACTGAAAGTGGCTCGCACCATTGCCGATGTGGAAGGAGACCCAGAGATT
GAAAGACACCATCTGCAGGAAGCGCTGAGCTATCGCGCCATTGATCGGTTGTTGCTGCACCTGCAAAAATTACTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.594

100

0.593
  comM Glaesserella parasuis strain SC1401

58.974

100

0.591
  comM Vibrio campbellii strain DS40M4

59.325

99.605

0.591
  comM Vibrio cholerae strain A1552

58.964

99.209

0.585
  comM Legionella pneumophila str. Paris

50.302

98.221

0.494
  comM Legionella pneumophila strain ERS1305867

50.302

98.221

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.59

100

0.437

Multiple sequence alignment