Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   GE022_RS08525 Genome accession   NZ_CP053790
Coordinates   1741146..1743161 (-) Length   671 a.a.
NCBI ID   WP_164405106.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_77_2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1736146..1748161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE022_RS08510 (GE022_008500) - 1737410..1737862 (+) 453 WP_093998815.1 universal stress protein -
  GE022_RS08515 (GE022_008505) - 1738197..1739585 (-) 1389 WP_003045103.1 Cof-type HAD-IIB family hydrolase -
  GE022_RS08520 (GE022_008510) - 1739658..1740623 (+) 966 WP_164405105.1 asparaginase -
  GE022_RS10755 - 1740787..1740938 (-) 152 Protein_1636 aldo/keto reductase family oxidoreductase -
  GE022_RS08525 (GE022_008515) recG/mmsA 1741146..1743161 (-) 2016 WP_164405106.1 ATP-dependent DNA helicase RecG Machinery gene
  GE022_RS08530 (GE022_008520) - 1743262..1744656 (-) 1395 WP_371864970.1 ATP-binding cassette domain-containing protein -
  GE022_RS08535 (GE022_008525) - 1744653..1745333 (-) 681 WP_164227913.1 energy-coupling factor transporter transmembrane component T -
  GE022_RS08540 (GE022_008530) - 1745330..1745923 (-) 594 WP_093998819.1 MptD family putative ECF transporter S component -
  GE022_RS08545 (GE022_008535) - 1745920..1747590 (-) 1671 WP_164405107.1 amino acid ABC transporter ATP-binding/permease protein -

Sequence

Protein


Download         Length: 671 a.a.        Molecular weight: 74947.07 Da        Isoelectric Point: 9.2267

>NTDB_id=394544 GE022_RS08525 WP_164405106.1 1741146..1743161(-) (recG/mmsA) [Streptococcus canis strain HL_77_2]
MLLTAPIASLKGLGPKSAEKFQKLAIYQVKDLLLYYPFRYEDFKSKSIVELLDGEKAVLTGTIVTPPSVQYYGFKRNRLT
FKLKQGEVVIGVSFFNQPYLQDKLILGNEVAIFGKWDQKKTALTGMKLLMTLEDDLQPVYHVAQGISQTALIKAIKAAFD
SGALASLKENLPDYLLAKYRLMPRQEAVYAMHFPKTLSEYKQALRRIKFEELFYFQMQLQVLKRANKSESNGLAIAFDQE
KLDHKIAALPFPLTQAQERSLKDILKDMRSGAHMNRLLQGDVGSGKTVIASLAMYAAYTAGLQSALMVPTEILAEQHYDS
LSQLFPDLSIAILTSGMKVPEKRTALATIADGSVDMIVGTHALIQDAVQYHKLGLVITDEQHRFGVKQRRIFREKGDNPD
VLMMTATPIPRTLAITAYGEMDVSIIDELPAGRKPIVTRWVKHQQLNTVLAWMKTELEQGAQAYVISPLIEESEALDLKN
AVALEAELKAYFKKSARIALMHGKMKTDEKEAIMQAFKAQEIDLLVSTTVIEVGVNVPNASIMLIMDADRFGLSQLHQLR
GRVGRGHKQSYAVLVANPKTESGKERMTIMTKTNDGFVLAEADLKMRGAGEIFGTRQSGIPEFKTADIVEDYAILEEARK
VAVAIVSEPNWQQQAKWQSVVSHLEIKGDFD

Nucleotide


Download         Length: 2016 bp        

>NTDB_id=394544 GE022_RS08525 WP_164405106.1 1741146..1743161(-) (recG/mmsA) [Streptococcus canis strain HL_77_2]
ATGTTATTAACAGCCCCCATTGCTAGCTTAAAAGGCTTAGGCCCTAAGTCAGCAGAAAAATTTCAAAAATTAGCTATTTA
TCAAGTGAAAGACCTCTTGCTCTATTACCCGTTTCGTTACGAGGATTTTAAGAGCAAGTCTATTGTTGAGCTTTTAGATG
GTGAAAAGGCTGTGCTCACAGGTACCATTGTGACGCCACCCAGTGTGCAATATTATGGCTTTAAGCGGAATCGGTTGACT
TTTAAATTGAAACAAGGCGAAGTGGTCATAGGGGTTAGTTTTTTTAACCAGCCTTATTTACAGGACAAATTGATTTTAGG
TAATGAGGTCGCTATTTTTGGAAAATGGGATCAGAAAAAAACGGCCTTGACAGGGATGAAATTACTCATGACCTTGGAAG
ATGATTTGCAGCCAGTTTATCATGTGGCTCAGGGCATTAGTCAAACGGCCCTGATAAAAGCTATCAAAGCAGCTTTTGAT
AGCGGAGCTTTAGCAAGTCTAAAGGAAAATCTGCCTGATTACCTCCTTGCTAAATACCGATTAATGCCAAGGCAAGAAGC
GGTTTATGCCATGCATTTTCCCAAAACCTTGAGTGAGTACAAGCAGGCCTTGAGACGCATTAAATTTGAGGAACTCTTTT
ATTTTCAAATGCAGTTGCAGGTATTGAAGCGAGCAAACAAATCAGAGAGTAATGGACTGGCTATTGCCTTTGATCAAGAA
AAGCTTGATCACAAAATTGCTGCTCTGCCATTCCCCTTGACCCAAGCTCAGGAACGAAGTCTAAAGGACATTTTAAAGGA
TATGCGTTCAGGTGCCCACATGAATCGGCTCTTGCAAGGAGATGTTGGATCTGGGAAAACAGTTATTGCTAGCCTTGCCA
TGTATGCTGCCTATACTGCTGGCCTCCAATCAGCCCTGATGGTGCCCACAGAAATTCTTGCCGAGCAACATTATGATAGT
CTGAGCCAGCTCTTTCCTGACCTTTCTATTGCTATTCTGACCTCAGGTATGAAGGTTCCTGAAAAACGCACAGCTTTAGC
GACTATTGCAGATGGATCGGTGGATATGATTGTGGGGACTCACGCGCTGATTCAGGATGCGGTTCAATACCACAAGTTAG
GTCTTGTCATTACAGATGAACAGCACCGATTTGGGGTTAAACAGCGCCGTATTTTCCGTGAAAAAGGCGATAATCCAGAT
GTCCTTATGATGACAGCAACTCCTATTCCAAGAACCTTAGCTATTACAGCCTATGGGGAAATGGATGTGTCCATTATTGA
CGAATTACCAGCTGGTCGAAAACCCATTGTCACGCGCTGGGTCAAGCATCAACAATTGAACACCGTTTTAGCTTGGATGA
AAACTGAACTGGAACAAGGAGCACAAGCCTATGTGATTTCTCCTTTGATTGAGGAATCTGAAGCCTTGGACCTTAAAAAT
GCTGTTGCCTTGGAAGCTGAATTAAAGGCCTATTTTAAGAAATCCGCCCGCATTGCTCTGATGCATGGTAAGATGAAGAC
CGACGAAAAAGAAGCCATCATGCAAGCTTTCAAAGCACAGGAAATTGATCTCTTGGTCTCAACAACAGTTATTGAAGTCG
GTGTCAATGTGCCTAACGCTAGTATCATGCTGATTATGGATGCCGACCGTTTTGGCCTTAGTCAACTGCATCAGCTACGT
GGGCGCGTAGGCCGTGGACACAAACAGTCTTATGCGGTGCTGGTGGCCAATCCTAAGACGGAATCGGGTAAGGAACGCAT
GACCATTATGACAAAAACTAATGATGGCTTTGTTCTGGCTGAAGCAGACCTCAAAATGAGAGGGGCTGGGGAAATTTTTG
GAACCCGTCAGTCTGGTATTCCAGAATTTAAGACTGCAGATATTGTCGAAGATTATGCCATTTTAGAAGAGGCTCGCAAG
GTAGCAGTAGCCATTGTTTCTGAGCCTAATTGGCAGCAGCAAGCAAAATGGCAGAGCGTTGTTAGTCATCTTGAAATCAA
AGGGGATTTTGATTAG

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(254-411)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(593-656)

Helicase conserved C-terminal domain (Helicase_C)

(453-566)

RecG wedge domain (RecG_wedge)

(7-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

69.151

100

0.692
  recG/mmsA Streptococcus pneumoniae R36A

69.151

100

0.692
  recG Bacillus subtilis subsp. subtilis str. 168

51.149

97.317

0.498
  recG Neisseria meningitidis strain C311

39.422

97.914

0.386

Multiple sequence alignment