Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   HICON_RS00600 Genome accession   NC_014922
Coordinates   130580..130927 (-) Length   115 a.a.
NCBI ID   WP_006995651.1    Uniprot ID   A0AAV2TZ57
Organism   Haemophilus influenzae F3047     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 125580..135927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HICON_RS00580 (HICON_03900) bioB 125970..126971 (-) 1002 WP_013527248.1 biotin synthase BioB -
  HICON_RS00585 (HICON_03910) thiQ 127083..127730 (-) 648 WP_013527249.1 thiamine ABC transporter ATP-binding protein -
  HICON_RS00590 (HICON_03920) thiP 127714..129330 (-) 1617 WP_013527250.1 thiamine/thiamine pyrophosphate ABC transporter permease -
  HICON_RS00595 (HICON_03930) thiB 129335..130333 (-) 999 WP_013527251.1 thiamine ABC transporter substrate binding subunit -
  HICON_RS00600 (HICON_03940) comE1/comEA 130580..130927 (-) 348 WP_006995651.1 helix-hairpin-helix domain-containing protein Machinery gene
  HICON_RS00605 (HICON_03950) ispH 131096..132040 (-) 945 WP_013527252.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  HICON_RS00610 (HICON_03960) lspA 132037..132552 (-) 516 WP_005664259.1 signal peptidase II -
  HICON_RS00615 (HICON_03970) - 132622..134181 (-) 1560 WP_013527253.1 phosphoethanolamine transferase -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12365.25 Da        Isoelectric Point: 8.0085

>NTDB_id=39435 HICON_RS00600 WP_006995651.1 130580..130927(-) (comE1/comEA) [Haemophilus influenzae F3047]
MKLMKTLFTSVVLCGALVVSSSFAEEKATEQTAQPVVATQAEAQIALAVVSDKLNINTATASEIQKSLTGIGAKKAEAIV
QYREKHGNFTNAEQLLEVQGIGKATLEKNRDRIIF

Nucleotide


Download         Length: 348 bp        

>NTDB_id=39435 HICON_RS00600 WP_006995651.1 130580..130927(-) (comE1/comEA) [Haemophilus influenzae F3047]
ATGAAATTAATGAAAACATTATTCACTTCGGTTGTATTGTGTGGTGCGCTGGTTGTTTCCTCGTCTTTTGCTGAGGAAAA
AGCGACAGAACAAACCGCTCAACCTGTTGTAGCAACTCAAGCTGAAGCTCAAATAGCACTAGCCGTAGTGAGCGATAAAT
TGAATATCAACACAGCAACTGCCAGTGAAATTCAAAAATCCCTAACTGGCATTGGTGCGAAAAAAGCGGAAGCTATTGTG
CAATATCGTGAAAAACACGGTAATTTTACTAATGCAGAACAGCTTTTAGAAGTACAAGGAATTGGCAAAGCAACACTAGA
GAAAAATCGTGATCGTATAATCTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

94.643

97.391

0.922
  comEA/comE1 Glaesserella parasuis strain SC1401

58.772

99.13

0.583
  comEA Vibrio cholerae C6706

43.636

95.652

0.417
  comEA Vibrio cholerae strain A1552

43.636

95.652

0.417
  comEA Vibrio campbellii strain DS40M4

40.179

97.391

0.391

Multiple sequence alignment