Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FS418_RS03845 Genome accession   NZ_CP045427
Coordinates   903508..905031 (-) Length   507 a.a.
NCBI ID   WP_142871758.1    Uniprot ID   A0AAJ4AQG3
Organism   Shewanella sp. YLB-09     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 898508..910031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FS418_RS03830 (FS418_03830) nhaC 899923..901449 (+) 1527 WP_223292983.1 Na+/H+ antiporter NhaC -
  FS418_RS03835 (FS418_03835) - 901527..902465 (-) 939 WP_142871756.1 acyltransferase -
  FS418_RS03840 (FS418_03840) - 902473..903378 (-) 906 WP_142871757.1 acyltransferase -
  FS418_RS03845 (FS418_03845) comM 903508..905031 (-) 1524 WP_142871758.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FS418_RS03850 (FS418_03850) - 905224..905820 (+) 597 WP_142871759.1 TetR/AcrR family transcriptional regulator -
  FS418_RS03855 (FS418_03855) - 905968..907125 (+) 1158 WP_142871760.1 iron-containing alcohol dehydrogenase -
  FS418_RS03860 (FS418_03860) - 907228..907908 (+) 681 WP_142871761.1 type 1 glutamine amidotransferase domain-containing protein -
  FS418_RS03865 (FS418_03865) - 907920..908546 (+) 627 WP_142871762.1 glutathione S-transferase -
  FS418_RS03870 (FS418_03870) cysE 908729..909514 (+) 786 WP_142871763.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55397.71 Da        Isoelectric Point: 8.8861

>NTDB_id=394029 FS418_RS03845 WP_142871758.1 903508..905031(-) (comM) [Shewanella sp. YLB-09]
MALACVATRANKGVEAPLVTVEVHLSNGLPAFNLVGLPETSVKEAKERVRSAIINAGFEFPMRRITVNLAPADLPKQGGR
YDLPIAIGILAASDQIPKKSLDKHEFVGELALSGHIRHCHGLLPVIVEARQQDTALVLPLDNRSEAELVGFNKVYFASHL
QGLSEYLHGQSQLPGIEPGLEWINTNDAEPQLCFSDVVGQYQAKLGLEIAAAGNHNLLLLGPPGTGKSMLASRMMQLLPP
LNYDEALEVATLHSVAGQFIDPHNFYRRPFRNPHHTSSAISLVGGGSNPKPGEISLAHRGVLFLDEVVEFPRKVLDCLRE
PMEAGEVVISRAAAKLTFASRFQLIAAMNPSPCGDTNNARATPDQIQRYLSRLSGPFLDRFDLTIEVPRLPDGALTQKTA
AAETSKSIALRVKAARESQLARAGVLNSDLTAKQLKQLGNFKQVDLLFLEQSVNKLGLSVRSYHRLQRVARTIADLNKCT
NVERRHIAQALGYRAMDRLLNSLKAQY

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=394029 FS418_RS03845 WP_142871758.1 903508..905031(-) (comM) [Shewanella sp. YLB-09]
ATGGCCCTCGCCTGTGTCGCCACTAGAGCCAATAAGGGAGTAGAAGCCCCTCTTGTCACCGTCGAAGTTCATCTCAGTAA
TGGCTTACCCGCATTCAATCTCGTTGGCTTACCTGAGACCTCAGTCAAAGAAGCGAAGGAACGCGTACGTAGCGCGATTA
TCAATGCGGGATTTGAATTTCCCATGCGACGCATCACAGTAAACTTGGCTCCAGCCGACCTGCCTAAGCAAGGCGGGCGC
TATGATCTACCCATTGCTATCGGCATCTTGGCAGCATCAGATCAAATCCCAAAAAAATCACTCGATAAACATGAGTTTGT
CGGCGAACTGGCCCTTTCAGGCCATATCAGACACTGTCATGGCCTTCTGCCTGTTATCGTAGAGGCTCGTCAACAAGATA
CAGCTTTGGTGCTCCCCTTAGATAATCGCTCCGAGGCCGAACTAGTGGGCTTCAATAAGGTTTATTTTGCTTCCCACCTA
CAAGGCCTGAGTGAATATTTACATGGCCAATCTCAACTTCCCGGTATTGAACCAGGACTGGAGTGGATCAATACCAATGA
CGCAGAACCTCAGCTATGTTTTAGTGATGTTGTTGGTCAATATCAGGCCAAGCTAGGCTTAGAAATCGCGGCAGCAGGCA
ACCACAATCTACTTTTATTGGGTCCTCCTGGAACCGGAAAAAGTATGCTGGCCAGTAGAATGATGCAACTACTGCCACCA
CTCAATTACGACGAAGCCTTAGAGGTCGCGACACTCCACTCGGTAGCAGGCCAATTTATCGACCCACACAATTTTTACCG
GCGACCTTTTAGAAATCCTCATCATACTAGCTCAGCAATTTCATTGGTGGGGGGTGGTAGCAACCCAAAGCCTGGCGAGA
TATCTTTGGCTCATCGCGGCGTACTGTTTCTCGATGAGGTGGTCGAATTTCCACGTAAGGTACTCGATTGCCTGCGAGAA
CCTATGGAAGCTGGTGAAGTGGTTATCTCACGCGCCGCCGCTAAGCTTACCTTCGCCAGCCGATTCCAATTAATCGCCGC
GATGAACCCTAGCCCATGTGGCGATACCAATAATGCCAGAGCAACACCCGATCAAATCCAGAGATATCTCTCTAGGCTAT
CTGGGCCTTTTTTAGATAGATTCGATCTGACTATCGAAGTTCCACGACTTCCTGACGGTGCGTTAACTCAAAAAACTGCT
GCAGCAGAAACCAGTAAATCCATCGCATTGCGGGTTAAAGCTGCCAGAGAATCACAGCTGGCACGGGCTGGAGTACTAAA
CAGTGACTTAACGGCCAAGCAGCTAAAGCAGTTGGGTAATTTCAAGCAGGTCGATTTGCTATTTCTGGAACAAAGCGTCA
ACAAATTAGGTTTATCGGTCAGGAGTTACCATCGCTTACAAAGAGTTGCGCGCACCATTGCCGACTTAAATAAGTGCACT
AACGTTGAACGCAGGCATATTGCCCAAGCACTAGGCTATAGGGCCATGGACCGACTTTTGAATAGCTTAAAAGCTCAGTA
TTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.577

100

0.56
  comM Haemophilus influenzae Rd KW20

55.227

100

0.552
  comM Glaesserella parasuis strain SC1401

54.314

100

0.546
  comM Vibrio campbellii strain DS40M4

54.028

100

0.542
  comM Legionella pneumophila str. Paris

48.8

98.619

0.481
  comM Legionella pneumophila strain ERS1305867

48.8

98.619

0.481
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.857

100

0.432

Multiple sequence alignment