Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   STND_RS06375 Genome accession   NC_017563
Coordinates   1201468..1202148 (-) Length   226 a.a.
NCBI ID   WP_011681349.1    Uniprot ID   -
Organism   Streptococcus thermophilus ND03     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1196468..1207148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STND_RS06355 (STND_1274) - 1196993..1197514 (-) 522 WP_011681345.1 YkgJ family cysteine cluster protein -
  STND_RS06360 (STND_1275) - 1197599..1199599 (-) 2001 WP_014608482.1 ABC transporter permease -
  STND_RS06365 (STND_1276) - 1199601..1200359 (-) 759 WP_014608483.1 ABC transporter ATP-binding protein -
  STND_RS06370 (STND_1277) - 1200504..1201478 (-) 975 WP_109195033.1 sensor histidine kinase -
  STND_RS06375 (STND_1278) braR 1201468..1202148 (-) 681 WP_011681349.1 response regulator transcription factor Regulator
  STND_RS06380 (STND_1279) - 1202599..1203179 (+) 581 Protein_1198 xanthine phosphoribosyltransferase -
  STND_RS10770 - 1203179..1204446 (+) 1268 Protein_1199 nucleobase:cation symporter-2 family protein -
  STND_RS06395 (STND_1282) - 1204574..1205923 (+) 1350 WP_014608488.1 MATE family efflux transporter -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 26206.51 Da        Isoelectric Point: 4.8038

>NTDB_id=39402 STND_RS06375 WP_011681349.1 1201468..1202148(-) (braR) [Streptococcus thermophilus ND03]
MHKILLVEDDEVIRQQVKKILEQWEYEVVLVEDFMEVLSLFVKEEPHLVLMDIGLPLFNGYHWCQEIRKVSKVPIMFLSS
RDQAMDIVMAINMGGDDFVTKPFDQNVLLAKIQGLLRRSYEFGKDQSLLEYMGVILNLKAMDLVYQGEVVSLTKNEFQIL
QVLFERSGNIVSREDLMKELWNSDFFIDDNTLSVNVARLRKKLEAVGLKDFIETKKGVGYGLRHDG

Nucleotide


Download         Length: 681 bp        

>NTDB_id=39402 STND_RS06375 WP_011681349.1 1201468..1202148(-) (braR) [Streptococcus thermophilus ND03]
ATGCATAAGATTTTATTAGTTGAGGACGACGAGGTTATCCGTCAACAAGTCAAGAAAATACTAGAACAGTGGGAGTACGA
AGTTGTTCTTGTTGAAGATTTCATGGAAGTATTATCTCTTTTTGTAAAAGAAGAACCCCACTTGGTTCTTATGGATATTG
GTTTACCTCTATTCAACGGTTATCACTGGTGTCAGGAAATTCGGAAGGTCTCCAAGGTGCCTATTATGTTCTTGTCTTCC
AGAGATCAGGCCATGGATATCGTTATGGCAATCAATATGGGTGGGGACGACTTTGTGACTAAACCCTTTGACCAAAATGT
TCTCTTGGCAAAAATTCAAGGGCTTTTGCGCCGATCTTATGAGTTTGGAAAGGATCAGAGTCTTTTGGAATATATGGGTG
TGATTCTGAACCTTAAGGCCATGGATCTGGTTTATCAGGGAGAAGTCGTTTCTTTGACTAAGAATGAATTTCAGATTTTA
CAAGTTCTCTTTGAGCGTTCTGGTAATATCGTTAGTCGTGAAGACCTCATGAAGGAGCTTTGGAATAGTGACTTCTTTAT
TGATGATAACACTCTCTCTGTAAATGTGGCACGTTTACGTAAGAAGTTAGAGGCAGTTGGTTTGAAGGACTTTATTGAAA
CCAAGAAAGGTGTCGGTTACGGGTTGCGTCATGATGGATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

51.835

96.46

0.5

Multiple sequence alignment