Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FIU83_RS17005 Genome accession   NZ_CP045417
Coordinates   3725713..3727215 (-) Length   500 a.a.
NCBI ID   WP_152485117.1    Uniprot ID   A0A5P9IVY6
Organism   Halomonas sp. THAF5a     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3720713..3732215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU83_RS16980 (FIU83_16995) - 3720832..3721212 (+) 381 WP_152485112.1 DUF423 domain-containing protein -
  FIU83_RS16985 (FIU83_17000) - 3721213..3721626 (-) 414 WP_152485113.1 PaaI family thioesterase -
  FIU83_RS16990 (FIU83_17005) - 3721810..3723996 (-) 2187 WP_152485114.1 malate synthase G -
  FIU83_RS16995 (FIU83_17010) - 3724244..3725218 (+) 975 WP_152485115.1 alpha/beta hydrolase -
  FIU83_RS17000 (FIU83_17015) - 3725215..3725697 (+) 483 WP_152485116.1 hypothetical protein -
  FIU83_RS17005 (FIU83_17020) comM 3725713..3727215 (-) 1503 WP_152485117.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FIU83_RS17010 (FIU83_17025) - 3727289..3727672 (-) 384 WP_152485118.1 accessory factor UbiK family protein -
  FIU83_RS17015 (FIU83_17030) - 3727966..3728304 (+) 339 WP_089847715.1 P-II family nitrogen regulator -
  FIU83_RS17020 (FIU83_17035) - 3728343..3729593 (+) 1251 WP_152485119.1 ammonium transporter -
  FIU83_RS17025 (FIU83_17040) glnK 3729745..3730083 (+) 339 WP_071943503.1 P-II family nitrogen regulator -
  FIU83_RS17035 (FIU83_17050) - 3730458..3731225 (+) 768 WP_253939504.1 cytochrome c5 family protein -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 53139.42 Da        Isoelectric Point: 8.5382

>NTDB_id=393890 FIU83_RS17005 WP_152485117.1 3725713..3727215(-) (comM) [Halomonas sp. THAF5a]
MTLAIIHTRAGLGLEAPEVLVEVHLANGLPGITLVGLPEAAVKESRERVRSALINAGFDFPLRRITLNLAPADLPKEGGR
FDLPIALGLLVASGQVPPEALDGVECAGELALDGRLRPVAGMLPMAMATRQARRRLIVPRANADEAALAGDLEVLPADHL
LEVVAHLLGQAPLLPHRASGPAPAATPPPDLADVRGQHQARRALEVAAAGGHNLLFAGPPGTGKTMLASRLPGILPPLTE
QEALEVAAIRSVSGLPHAAEWGVRPFRAPHHTASAVALVGGGSRPRPGEISLAHRGVLFLDELPEFSRHVLEVMREPMES
GQIHIARASHERRFPAGFQLVAAMNPCPCGHLGDPRRACHCTAAQIQRYQSRLSGPLLDRIDLQVEVPALAPEQLTSREP
GEASATVRERVLAARARQAARGGLNARLAGRDLEAACGLVATDRAWLAGVLERLRLSARAYHRVLRVALTLADLAGEARP
GRDQLIEAIGYRQLDRLLKG

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=393890 FIU83_RS17005 WP_152485117.1 3725713..3727215(-) (comM) [Halomonas sp. THAF5a]
ATGACGCTGGCAATCATCCACACCCGGGCGGGCCTCGGCCTCGAGGCCCCCGAGGTGCTGGTCGAGGTGCACCTGGCCAA
CGGGCTGCCCGGCATCACCCTGGTGGGGCTGCCGGAGGCCGCGGTGAAGGAGAGCCGCGAGCGGGTGCGCAGCGCCCTGA
TCAACGCCGGCTTCGACTTTCCCCTGCGGCGCATCACCCTCAACCTCGCCCCTGCCGACCTGCCCAAGGAGGGCGGTCGC
TTCGACCTGCCCATCGCCCTGGGGCTGCTGGTGGCCTCGGGCCAGGTGCCTCCGGAGGCCCTCGACGGGGTCGAGTGCGC
GGGCGAGCTGGCCCTGGACGGCCGTCTGCGCCCCGTCGCCGGCATGCTGCCGATGGCCATGGCCACGCGCCAGGCGCGAC
GCCGCCTGATCGTGCCTCGGGCCAACGCCGACGAGGCGGCCCTGGCCGGCGACCTGGAGGTGCTGCCCGCCGACCACCTG
CTCGAGGTGGTGGCCCACCTGCTCGGCCAGGCGCCGCTGCTCCCGCATCGTGCGTCCGGTCCCGCCCCGGCCGCGACGCC
GCCTCCCGACCTCGCCGACGTGCGCGGCCAGCACCAGGCGCGCCGCGCCTTGGAGGTGGCCGCGGCCGGCGGCCACAACC
TCCTGTTTGCCGGGCCGCCCGGCACCGGCAAGACCATGCTGGCCAGCCGGCTGCCGGGCATCCTGCCGCCGCTCACCGAG
CAGGAGGCCCTGGAGGTGGCGGCGATCCGCTCGGTCAGCGGCCTGCCCCACGCCGCCGAGTGGGGCGTACGCCCCTTCCG
CGCCCCGCACCATACCGCCAGCGCCGTGGCCCTGGTCGGCGGTGGCTCGAGGCCGCGGCCCGGCGAGATCTCCCTGGCCC
ACCGAGGCGTGCTGTTCCTCGATGAGCTGCCGGAGTTCTCCCGCCACGTGCTGGAGGTGATGCGCGAGCCCATGGAGTCC
GGGCAGATCCATATCGCCCGGGCCAGCCACGAGCGCCGTTTTCCCGCCGGTTTCCAGCTGGTCGCGGCGATGAACCCCTG
TCCCTGCGGACACCTGGGCGATCCGCGACGCGCCTGCCACTGCACGGCGGCGCAGATCCAGCGCTACCAGTCGCGGCTCT
CCGGCCCGCTGCTCGATCGCATCGACCTCCAGGTGGAGGTGCCGGCGCTGGCGCCGGAGCAGCTGACCTCCCGGGAACCG
GGCGAGGCCTCGGCGACGGTGCGCGAGCGGGTGCTGGCGGCGCGGGCGCGGCAGGCGGCCCGCGGGGGACTCAACGCCCG
GCTGGCCGGGCGCGACCTGGAGGCGGCCTGTGGCCTCGTGGCCACCGATCGGGCCTGGCTCGCCGGCGTGCTGGAGCGCC
TCAGGCTCTCGGCGCGGGCCTACCACCGGGTGCTGCGCGTGGCCCTGACCCTGGCCGACCTGGCCGGGGAGGCGCGCCCG
GGGCGCGACCAGCTGATCGAGGCGATCGGCTATCGGCAGCTCGATCGGCTGCTCAAGGGTTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P9IVY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.461

100

0.568
  comM Vibrio campbellii strain DS40M4

55.07

100

0.554
  comM Glaesserella parasuis strain SC1401

53.438

100

0.544
  comM Haemophilus influenzae Rd KW20

53.452

100

0.542
  comM Legionella pneumophila str. Paris

49.704

100

0.504
  comM Legionella pneumophila strain ERS1305867

49.704

100

0.504
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.351

100

0.47

Multiple sequence alignment