Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FIU84_RS02705 Genome accession   NZ_CP045416
Coordinates   591604..592668 (+) Length   354 a.a.
NCBI ID   WP_063539612.1    Uniprot ID   -
Organism   Stutzerimonas frequens strain THAF7b     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 586604..597668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU84_RS02695 (FIU84_02710) - 587459..588880 (-) 1422 WP_152482034.1 IS1182 family transposase -
  FIU84_RS02700 (FIU84_02715) - 589002..591422 (-) 2421 WP_063539611.1 penicillin-binding protein 1A -
  FIU84_RS02705 (FIU84_02720) comM 591604..592668 (+) 1065 WP_063539612.1 pilus assembly protein PilM Machinery gene
  FIU84_RS02710 (FIU84_02725) - 592668..593240 (+) 573 WP_063539613.1 PilN domain-containing protein -
  FIU84_RS02715 (FIU84_02730) pilO 593237..593860 (+) 624 WP_063539614.1 type 4a pilus biogenesis protein PilO -
  FIU84_RS02720 (FIU84_02735) pilP 593857..594384 (+) 528 WP_063539615.1 type 4a pilus biogenesis lipoprotein PilP -
  FIU84_RS02725 (FIU84_02740) pilQ 594438..596594 (+) 2157 WP_063539616.1 type IV pilus secretin PilQ Machinery gene
  FIU84_RS02730 (FIU84_02745) aroK 596600..597145 (+) 546 WP_063539617.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37798.21 Da        Isoelectric Point: 4.6346

>NTDB_id=393845 FIU84_RS02705 WP_063539612.1 591604..592668(+) (comM) [Stutzerimonas frequens strain THAF7b]
MLGLFTKKANTLLGIDISSTSVKLLELSRSGNRYRVEAYAVEPLPPNAVVEKNIAELEGVGQALQRVVAKAKTGCKSAVV
AVSGSAVITKTIEMDAGLSDEELENQLKIEADQYIPYPLEEVAIDFEVQGPAPRAPGRVEVLLAACRKENVEVREAALAL
AGLTAKVVDVEAYALERSYDLLAPQLGSTHGELTVAVVDIGATMTTLSVLHNGRTIYSREQLFGGRQLTEEIQRRYGLSQ
EEAGLAKKQGGLPDDYDSEVLLPFKEAVVQQVSRSLQFFFAAGQFHDVDCILLAGGTASIPGLDHLIQQKIGTQTLVANP
FADMALSSKVNAGALASDAPSLMIACGLALRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=393845 FIU84_RS02705 WP_063539612.1 591604..592668(+) (comM) [Stutzerimonas frequens strain THAF7b]
GTGCTAGGGCTCTTCACTAAGAAAGCGAACACGCTGCTTGGGATCGATATCAGTTCGACCTCAGTCAAGCTTCTCGAATT
AAGTCGATCGGGGAACCGCTACCGGGTTGAGGCTTATGCGGTTGAGCCGCTCCCACCAAATGCCGTGGTCGAAAAGAACA
TCGCTGAACTGGAAGGCGTTGGCCAGGCTCTGCAACGTGTGGTCGCAAAGGCTAAGACCGGCTGCAAGTCAGCCGTGGTA
GCTGTCTCCGGTTCAGCGGTGATCACCAAGACGATCGAGATGGACGCCGGGCTGTCTGACGAGGAGCTGGAAAACCAGCT
GAAGATCGAAGCCGACCAATATATTCCCTATCCGTTGGAAGAGGTGGCGATCGACTTCGAGGTCCAGGGCCCCGCGCCGC
GTGCGCCCGGTCGGGTCGAGGTTCTGCTCGCTGCCTGTCGCAAGGAAAACGTCGAAGTGCGCGAGGCGGCACTGGCTCTG
GCCGGGCTCACCGCGAAGGTCGTTGATGTCGAGGCCTATGCGCTCGAGCGCTCCTATGACCTTCTGGCGCCGCAGTTGGG
GAGCACGCATGGTGAACTGACCGTCGCTGTCGTGGATATCGGCGCAACGATGACGACTCTGAGCGTCCTGCATAACGGAC
GCACCATATACAGTCGTGAGCAATTGTTCGGGGGGCGGCAGCTGACGGAGGAAATCCAACGCCGTTATGGGCTGTCACAA
GAGGAGGCTGGCCTCGCTAAAAAGCAGGGAGGGCTTCCTGATGACTACGACAGTGAGGTTTTGCTTCCGTTCAAAGAGGC
GGTCGTTCAGCAGGTCTCACGCTCGCTGCAGTTCTTCTTCGCTGCTGGGCAGTTTCATGATGTCGATTGCATTCTGCTTG
CTGGTGGAACGGCTTCCATCCCGGGGCTTGATCATCTGATTCAGCAGAAGATCGGCACCCAGACTCTAGTTGCCAATCCG
TTTGCCGATATGGCTTTGAGTAGCAAGGTCAACGCGGGCGCGCTGGCCAGTGATGCGCCCTCGCTGATGATTGCGTGTGG
GTTGGCGCTAAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

56.497

100

0.565
  pilM Acinetobacter baumannii D1279779

56.497

100

0.565
  comM Acinetobacter baylyi ADP1

53.672

100

0.537
  pilM Legionella pneumophila strain ERS1305867

46.893

100

0.469

Multiple sequence alignment