Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FIU84_RS02425 Genome accession   NZ_CP045416
Coordinates   533396..534892 (-) Length   498 a.a.
NCBI ID   WP_152480767.1    Uniprot ID   -
Organism   Stutzerimonas frequens strain THAF7b     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 528396..539892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU84_RS02415 (FIU84_02435) - 529620..531257 (+) 1638 WP_152482042.1 bifunctional diguanylate cyclase/phosphodiesterase -
  FIU84_RS02420 (FIU84_02440) - 531288..533264 (-) 1977 WP_152480766.1 choline BCCT transporter BetT -
  FIU84_RS02425 (FIU84_02445) comM 533396..534892 (-) 1497 WP_152480767.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FIU84_RS02430 (FIU84_02450) - 534929..535189 (-) 261 WP_013981620.1 accessory factor UbiK family protein -
  FIU84_RS02435 (FIU84_02455) glnK 535586..535924 (+) 339 WP_003096476.1 P-II family nitrogen regulator -
  FIU84_RS02440 (FIU84_02460) - 535963..537279 (+) 1317 WP_152480768.1 ammonium transporter -
  FIU84_RS02445 (FIU84_02465) - 537402..538652 (+) 1251 WP_125868763.1 ammonium transporter -
  FIU84_RS02450 (FIU84_02470) - 538755..539180 (+) 426 WP_152480769.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  FIU84_RS02455 (FIU84_02475) sutA 539259..539585 (+) 327 WP_125868765.1 transcriptional regulator SutA -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53247.07 Da        Isoelectric Point: 7.9499

>NTDB_id=393843 FIU84_RS02425 WP_152480767.1 533396..534892(-) (comM) [Stutzerimonas frequens strain THAF7b]
MSLAIVHSRAQIGVEAPAVTVEAHLANGLPALTLVGLPETAVKESKDRVRSAILSSGFDFPARRITLNLAPADLPKDGGR
FDLSIALGILAASGQLPNERLDKLECLGELALSGALRPVQGVLPAALAARAAGRALLVPRANAEEASLASGLTVYAAEHL
LEVAAHFNGVTPLEPYVAQGLLRQVQPYPDLADVQGQQAAKRGLLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLDE
QEALEVAAIHSVASHSPLEHWPQRPFRQPHHSASGPALVGGGSRPQPGEITLAHQGVLFLDELPEFDRKVLEVLREPLES
GHIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPNGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVAREATALNAPPQT
GQSSAVLAAQVAEARQRQLARQGCANAFLDLAGLRQHCQLTTEDQAWLERACERLALSLRAAHRLLKVARTLADLEQAER
ISRQHLAEALQYRPGSQA

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=393843 FIU84_RS02425 WP_152480767.1 533396..534892(-) (comM) [Stutzerimonas frequens strain THAF7b]
ATGTCCCTGGCCATCGTTCATAGCCGCGCGCAGATCGGCGTCGAAGCGCCGGCGGTGACCGTCGAAGCCCATCTGGCCAA
CGGTCTGCCGGCGCTGACCCTGGTCGGCCTGCCGGAAACCGCGGTCAAGGAAAGCAAGGATCGCGTGCGCAGCGCCATCC
TCAGCTCCGGCTTCGATTTTCCCGCACGACGCATCACCCTCAACCTCGCCCCTGCCGACCTGCCCAAGGACGGTGGCCGC
TTCGACCTGTCCATTGCCCTGGGCATCCTTGCCGCCAGCGGCCAGCTGCCCAACGAGCGGCTGGACAAACTGGAGTGCCT
CGGCGAGCTGGCCCTGTCCGGCGCCTTGCGCCCGGTGCAGGGCGTGCTGCCGGCCGCCCTTGCCGCACGTGCCGCCGGCC
GTGCACTGCTGGTGCCGCGGGCCAACGCCGAGGAAGCCAGCCTCGCCTCGGGCCTGACCGTCTATGCCGCCGAACACTTG
CTCGAGGTCGCCGCGCACTTCAACGGCGTCACGCCACTCGAGCCCTATGTTGCCCAGGGCCTGCTACGGCAGGTCCAGCC
TTACCCTGACCTGGCCGACGTGCAGGGCCAGCAGGCGGCCAAGCGCGGCCTGCTGATCGCCGCGGCCGGTGCGCACAACC
TGCTGTTTTCTGGGCCACCCGGTACCGGCAAGACGCTGCTGGCCAGCCGCCTGCCCGGCCTGTTGCCGCCGCTGGACGAA
CAGGAGGCGCTGGAAGTCGCCGCCATCCATTCGGTGGCCAGCCACAGCCCTCTGGAGCATTGGCCGCAACGACCGTTCCG
CCAGCCCCATCACAGTGCATCAGGGCCGGCTCTGGTCGGTGGCGGCAGCCGCCCGCAGCCGGGTGAAATCACCCTGGCGC
ATCAGGGTGTGCTGTTTCTCGACGAACTGCCTGAGTTCGATCGCAAGGTACTTGAGGTCCTGCGCGAGCCACTGGAATCC
GGCCATATCGTAATCGCCCGGGCGCGCGACAAGGTGCGCTTTCCGGCGCGTTTTCAGCTCGTGGCGGCGATGAACCCCTG
CCCCTGTGGCTACCTGGGCGACCCCAACGGGCGCTGCCGCTGCACACCGGAGCAGATCCAGCGCTACCGCAACAAGCTCT
CCGGGCCGCTGCTCGACCGCATCGACCTGCACCTGACCGTGGCGCGCGAAGCAACCGCGCTCAACGCACCGCCGCAGACG
GGCCAGAGCAGCGCGGTGCTGGCCGCGCAGGTCGCCGAGGCACGGCAGCGGCAACTCGCCCGTCAGGGCTGCGCCAACGC
CTTTCTCGATCTGGCCGGCCTGCGCCAGCACTGCCAGCTGACCACCGAGGACCAGGCCTGGCTGGAACGCGCCTGCGAAC
GCCTGGCGCTGTCGTTGCGCGCCGCGCACCGCCTGCTCAAGGTGGCGCGCACCCTCGCCGATCTGGAACAGGCCGAGCGA
ATCAGCCGTCAGCACCTTGCCGAAGCGCTGCAGTACCGGCCCGGCAGTCAAGCCTGA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.768

99.398

0.564
  comM Vibrio campbellii strain DS40M4

56.566

99.398

0.562
  comM Glaesserella parasuis strain SC1401

55.777

100

0.562
  comM Haemophilus influenzae Rd KW20

55.09

100

0.554
  comM Legionella pneumophila str. Paris

50.791

100

0.516
  comM Legionella pneumophila strain ERS1305867

50.791

100

0.516
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.521

100

0.47

Multiple sequence alignment