Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FIU88_RS16835 Genome accession   NZ_CP045399
Coordinates   3617786..3619291 (-) Length   501 a.a.
NCBI ID   WP_016855900.1    Uniprot ID   A0A5P9HHI3
Organism   Halomonas sp. THAF12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3612786..3624291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU88_RS16810 (FIU88_16845) - 3612911..3613303 (+) 393 WP_152479949.1 DUF423 domain-containing protein -
  FIU88_RS16815 (FIU88_16850) - 3613279..3613692 (-) 414 WP_016855896.1 PaaI family thioesterase -
  FIU88_RS16820 (FIU88_16855) - 3613846..3616020 (-) 2175 WP_152479950.1 malate synthase G -
  FIU88_RS16825 (FIU88_16860) - 3616251..3617234 (+) 984 WP_016855898.1 alpha/beta hydrolase -
  FIU88_RS16830 (FIU88_16865) - 3617231..3617740 (+) 510 WP_152479951.1 hypothetical protein -
  FIU88_RS16835 (FIU88_16870) comM 3617786..3619291 (-) 1506 WP_016855900.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FIU88_RS16840 (FIU88_16875) - 3619366..3619767 (-) 402 WP_152479952.1 accessory factor UbiK family protein -
  FIU88_RS16845 (FIU88_16880) - 3620069..3620407 (+) 339 WP_016855902.1 P-II family nitrogen regulator -
  FIU88_RS16850 (FIU88_16885) - 3620447..3621769 (+) 1323 WP_016855903.1 ammonium transporter -
  FIU88_RS16855 (FIU88_16890) glnK 3621914..3622252 (+) 339 WP_016855904.1 P-II family nitrogen regulator -
  FIU88_RS19460 - 3622281..3622382 (+) 102 Protein_3307 P-II family nitrogen regulator -
  FIU88_RS16860 (FIU88_16895) - 3622466..3623242 (-) 777 WP_016855905.1 ferredoxin--NADP reductase -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 53596.74 Da        Isoelectric Point: 8.0040

>NTDB_id=393774 FIU88_RS16835 WP_016855900.1 3617786..3619291(-) (comM) [Halomonas sp. THAF12]
MTLSIVRTRAGLGLEAPEVLVEVHLANGLPGITLVGLPETAVRESRERVRSALVNAGFDFPLRRITLNLAPADLPKEGGR
FDLPIALGILVASGQIPAAALAETECAGELALDGALRPVAGVLPLALATRRAGRRLIVPRANADEAALAGGLEVLPADHL
LEVVAHLLGQAPIAPHRASRPAEAPLAGADLAEVRGQHQARRALEVAASGGHNLLLAGPPGTGKTMLASRLPGILPPLTE
DETLEVAAVRSVCGLPLDEGWGRRPFRAPHHTASAVALVGGGSRPRPGEISLAHRGVLFLDELPEFPRQVLEVMREPMES
GRIHIARASHERRYPARFQLVAAMNPCPCGHLGDPRRACHCTAAQIQRYQARLSGPLLDRIDLQVEVPALPPEQLTAHER
GEPSEAVRERVLAARERQWARGALNAHLASRELEDACALNGADRAWLAGVLERLNLSARAYHRVLRVALTLADLAGEARP
GREQLIEAIGYRQLDRLLQGR

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=393774 FIU88_RS16835 WP_016855900.1 3617786..3619291(-) (comM) [Halomonas sp. THAF12]
ATGACCCTGTCGATCGTTCGCACCCGGGCCGGTCTCGGCCTCGAGGCCCCCGAGGTGCTGGTGGAAGTGCATCTGGCCAA
CGGCCTGCCCGGCATCACCCTGGTCGGGCTGCCGGAGACGGCCGTCAGGGAGAGCCGCGAGCGGGTGCGCAGTGCGCTCG
TCAACGCCGGCTTCGACTTCCCGCTGCGTCGCATCACCCTCAACCTCGCGCCCGCCGACCTGCCCAAGGAAGGCGGGCGC
TTCGACCTGCCCATCGCCCTGGGGATATTGGTGGCCTCGGGGCAGATTCCCGCCGCGGCGCTGGCCGAGACCGAATGCGC
GGGCGAGCTCGCCCTGGACGGGGCGCTGCGCCCGGTGGCCGGGGTGCTGCCGCTGGCGCTGGCCACGCGCCGTGCCGGGC
GGCGGCTGATCGTGCCCCGGGCCAACGCCGATGAGGCGGCGCTGGCCGGCGGCCTCGAGGTGCTGCCCGCCGATCATCTG
CTCGAGGTGGTGGCGCACCTGCTGGGGCAGGCGCCGATCGCACCCCATCGGGCGTCGCGTCCCGCCGAGGCCCCGTTGGC
GGGGGCCGACCTCGCCGAGGTGCGGGGCCAGCATCAGGCCCGGCGGGCCCTGGAGGTCGCCGCCAGCGGCGGCCACAACC
TGCTGCTGGCCGGCCCGCCCGGCACCGGCAAGACCATGCTGGCCAGTCGCCTGCCCGGCATCCTGCCGCCGCTGACCGAG
GACGAGACCCTGGAGGTGGCGGCGGTGCGCTCGGTGTGCGGGCTGCCGCTCGACGAGGGCTGGGGGCGCCGGCCCTTCCG
GGCGCCCCACCACACCGCCAGCGCGGTGGCGCTGGTCGGCGGCGGGTCGCGGCCCAGGCCCGGCGAGATCTCGCTGGCCC
ACCGCGGCGTGCTGTTTCTCGACGAGCTGCCCGAATTCCCCCGCCAGGTGCTCGAGGTGATGCGCGAGCCCATGGAATCC
GGGCGCATCCATATCGCCCGCGCCAGCCACGAGCGGCGCTATCCGGCGCGCTTCCAGCTGGTGGCGGCGATGAACCCCTG
CCCCTGCGGCCATCTCGGCGATCCACGCCGGGCCTGCCACTGCACCGCCGCCCAGATCCAGCGCTATCAGGCGCGACTCT
CCGGCCCGCTGCTCGACCGCATCGACCTGCAGGTGGAGGTGCCGGCGCTGCCGCCGGAGCAGCTGACCGCCCATGAGCGA
GGCGAGCCCTCGGAGGCGGTGCGCGAGCGGGTGCTGGCGGCCCGCGAGCGCCAGTGGGCGCGCGGCGCGCTCAACGCCCA
TCTGGCCAGCCGCGAGCTGGAGGACGCCTGCGCGCTGAACGGGGCGGATCGGGCCTGGCTGGCCGGGGTGCTGGAACGGC
TGAACCTCTCGGCGCGGGCCTATCACCGGGTGCTGCGGGTGGCGCTGACCCTGGCCGACCTGGCCGGCGAGGCACGCCCC
GGGCGCGAGCAGCTGATCGAGGCGATCGGCTATCGCCAGCTCGATCGGCTGCTGCAGGGGCGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P9HHI3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.865

100

0.561
  comM Vibrio campbellii strain DS40M4

55.666

100

0.559
  comM Glaesserella parasuis strain SC1401

55.03

100

0.557
  comM Haemophilus influenzae Rd KW20

54.528

100

0.553
  comM Legionella pneumophila str. Paris

50.696

100

0.509
  comM Legionella pneumophila strain ERS1305867

50.696

100

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

48.29

99.202

0.479

Multiple sequence alignment