Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   STND_RS01930 Genome accession   NC_017563
Coordinates   349471..350133 (+) Length   220 a.a.
NCBI ID   WP_014607994.1    Uniprot ID   -
Organism   Streptococcus thermophilus ND03     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 344471..355133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STND_RS01900 (STND_0356) - 344789..345499 (+) 711 WP_014607989.1 ABC transporter ATP-binding protein -
  STND_RS09895 - 345635..346295 (+) 661 Protein_330 CBS and ACT domain-containing protein -
  STND_RS01915 (STND_0359) cysK 346462..347388 (-) 927 WP_014607992.1 cysteine synthase A -
  STND_RS01920 (STND_0360) - 347490..348116 (-) 627 WP_011225515.1 YigZ family protein -
  STND_RS01925 (STND_0361) comFA/cflA 348171..349490 (+) 1320 WP_014607993.1 DEAD/DEAH box helicase Machinery gene
  STND_RS01930 (STND_0362) comFC/cflB 349471..350133 (+) 663 WP_014607994.1 ComF family protein Machinery gene
  STND_RS01935 (STND_0363) hpf 350212..350760 (+) 549 WP_011680772.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25993.38 Da        Isoelectric Point: 9.1304

>NTDB_id=39371 STND_RS01930 WP_014607994.1 349471..350133(+) (comFC/cflB) [Streptococcus thermophilus ND03]
MKCLLCNEWIEPVAQLSDLIMFKQRREYSCEDCKAQFKKLGKARCSNCYKIIDGNSCFDCKIWAKKGYIPKHFAIYRYEE
NMKEYFSRYKFMGDYCLRKIFQQEIKANLKSFLKKGYILVPVPLSEERLEERGFNQVKGLLEGIPYKNIFEKREIEKQSS
RTREERLSQDNSFSLKKGIELPSKIIIIDDIYTTGSTLYQMVKLLDGLDVKEILTFSLAR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=39371 STND_RS01930 WP_014607994.1 349471..350133(+) (comFC/cflB) [Streptococcus thermophilus ND03]
ATGAAGTGTCTACTATGTAATGAATGGATTGAACCAGTAGCTCAATTAAGTGATTTAATTATGTTTAAACAAAGAAGAGA
GTATTCTTGTGAAGATTGTAAAGCTCAATTTAAAAAGCTTGGGAAGGCGAGATGTTCAAATTGTTATAAAATAATAGATG
GAAATAGTTGCTTTGATTGCAAAATTTGGGCGAAAAAAGGCTATATTCCAAAACATTTTGCCATTTATCGTTATGAAGAA
AACATGAAAGAGTATTTTAGTCGCTATAAATTTATGGGAGATTATTGTCTTAGAAAAATATTTCAACAAGAAATTAAAGC
CAATTTAAAGTCTTTTTTAAAGAAAGGTTATATCTTAGTACCTGTCCCCTTGTCGGAAGAACGCCTGGAAGAGAGAGGAT
TCAATCAAGTTAAAGGATTACTAGAGGGAATCCCCTATAAAAACATTTTTGAAAAAAGAGAGATCGAGAAGCAATCCTCG
AGAACACGCGAAGAGCGGTTAAGTCAAGATAATTCTTTCAGTTTGAAGAAAGGTATTGAGCTACCAAGTAAGATCATCAT
AATCGATGATATTTACACAACAGGATCTACCCTGTATCAAATGGTCAAACTATTAGATGGTTTAGATGTCAAAGAAATTT
TGACATTTTCCTTAGCTAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

44.595

100

0.45
  comFC/cflB Streptococcus mitis SK321

44.144

100

0.445
  comFC/cflB Streptococcus pneumoniae Rx1

43.243

100

0.436
  comFC/cflB Streptococcus pneumoniae D39

43.243

100

0.436
  comFC/cflB Streptococcus pneumoniae R6

43.243

100

0.436
  comFC/cflB Streptococcus pneumoniae TIGR4

43.243

100

0.436

Multiple sequence alignment