Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FIU95_RS00790 Genome accession   NZ_CP045369
Coordinates   169981..171477 (-) Length   498 a.a.
NCBI ID   WP_152450584.1    Uniprot ID   A0A5P9ERS0
Organism   Microbulbifer sp. THAF38     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 164981..176477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU95_RS00755 (FIU95_00755) - 165135..166085 (+) 951 WP_152450571.1 S9 family peptidase -
  FIU95_RS00760 (FIU95_00760) bla 166128..166949 (+) 822 WP_371416957.1 subclass B3 metallo-beta-lactamase -
  FIU95_RS00765 (FIU95_00765) - 166993..167463 (+) 471 WP_152450574.1 GNAT family N-acetyltransferase -
  FIU95_RS00770 (FIU95_00770) - 167504..168802 (+) 1299 WP_152450576.1 amidohydrolase family protein -
  FIU95_RS00775 (FIU95_00775) - 168905..169105 (-) 201 WP_152450578.1 hypothetical protein -
  FIU95_RS00780 (FIU95_00780) - 169102..169545 (-) 444 WP_152450580.1 MarR family winged helix-turn-helix transcriptional regulator -
  FIU95_RS00785 (FIU95_00785) - 169545..169832 (-) 288 WP_152450582.1 putative quinol monooxygenase -
  FIU95_RS00790 (FIU95_00790) comM 169981..171477 (-) 1497 WP_152450584.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FIU95_RS00795 (FIU95_00795) - 171512..171754 (-) 243 WP_152450586.1 accessory factor UbiK family protein -
  FIU95_RS00800 (FIU95_00800) - 172177..172929 (+) 753 WP_152450588.1 TorF family putative porin -
  FIU95_RS00805 (FIU95_00805) - 172976..173314 (+) 339 WP_152450590.1 P-II family nitrogen regulator -
  FIU95_RS00810 (FIU95_00810) - 173370..174629 (+) 1260 WP_152450592.1 ammonium transporter -
  FIU95_RS00815 (FIU95_00815) - 174717..175055 (+) 339 WP_152450594.1 P-II family nitrogen regulator -
  FIU95_RS00820 (FIU95_00820) - 175427..175651 (+) 225 WP_152450596.1 hypothetical protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53679.29 Da        Isoelectric Point: 8.3965

>NTDB_id=393692 FIU95_RS00790 WP_152450584.1 169981..171477(-) (comM) [Microbulbifer sp. THAF38]
MSLSVTYTRAQLGVNAPLVTVETHLANGLPAFHIVGLPEAAVRESRDRVRSALINSHFEFPQRRITVNLAPADLPKEGGR
YDLAIAIGILAASGQVPIEPLESYEFIGELALTGGIRQVSGALPAAIASAAAERLLIVPNENSSEAALAGSEIASANSLL
GVCAELHGREKLPRGEVRTEQVITQAADLADVRGQLKARRALEVAAAGGHNLLFYGPPGTGKTMLASRLPGILPPLTSRE
SLEVAAVYSSAGLPHQSHRPFRAPHHSASPTALVGGGSTPRPGEISLAHRGVLFLDEMPEFPRHALEILREPLENGEVRI
SRARAQVTFPAHFQLVAAMNPCPCGYLGEPRCRCTPDQIDRYRNKLSGPLLDRIDMQVEVGTMSAVQLQDSPPGESSERV
RERVCNARQQQLQRQGTINSLLKGAPLENHCALGDTEKLLLRQSVEKLGLSARSYHRVLKVARTLADLAKQERIGTAQIA
EALAYRNLDRRQASVQTH

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=393692 FIU95_RS00790 WP_152450584.1 169981..171477(-) (comM) [Microbulbifer sp. THAF38]
GTGAGCCTGTCAGTTACCTACACCCGGGCACAGTTGGGTGTTAACGCCCCACTGGTCACCGTTGAGACCCACTTGGCCAA
CGGGCTCCCCGCCTTCCATATCGTCGGCCTGCCCGAAGCCGCCGTACGCGAAAGCCGTGACCGGGTGCGCAGTGCCCTGA
TCAACAGTCATTTTGAATTCCCTCAGCGGCGTATCACCGTTAATCTGGCCCCCGCCGATCTACCCAAAGAGGGCGGGCGC
TACGACCTCGCTATCGCTATCGGCATACTCGCTGCCTCTGGCCAAGTTCCCATTGAGCCTCTGGAAAGCTACGAATTTAT
TGGAGAGCTCGCCCTTACCGGCGGAATACGCCAAGTCAGCGGCGCACTCCCAGCAGCTATCGCCAGTGCCGCCGCCGAGC
GTCTATTGATAGTACCCAACGAAAATAGTAGCGAAGCTGCCCTGGCCGGTAGCGAAATCGCTAGCGCAAACTCACTACTT
GGGGTGTGTGCAGAACTGCACGGCAGGGAGAAACTACCACGCGGGGAAGTGCGAACGGAGCAAGTGATTACTCAGGCTGC
GGACCTCGCCGATGTTCGCGGCCAGCTCAAAGCGAGGCGCGCATTGGAAGTCGCTGCAGCAGGAGGCCACAACCTACTGT
TCTACGGACCACCGGGTACAGGCAAAACCATGCTGGCCAGCCGCCTGCCAGGCATATTGCCGCCACTGACCAGCCGTGAA
TCTTTAGAAGTCGCCGCCGTATACTCCAGCGCCGGCTTACCCCACCAAAGTCACAGGCCATTCCGCGCACCGCACCACAG
CGCCTCCCCGACTGCCCTGGTCGGCGGCGGCAGCACCCCACGCCCAGGAGAAATTTCCCTGGCTCACCGCGGCGTCTTAT
TTCTAGATGAAATGCCAGAGTTTCCCCGCCATGCTTTGGAGATACTGCGCGAACCACTGGAGAATGGCGAGGTGCGTATT
TCCCGCGCCAGAGCGCAAGTCACCTTCCCCGCCCACTTCCAGCTGGTGGCTGCCATGAACCCCTGCCCCTGTGGTTATCT
GGGGGAACCGCGCTGCCGCTGCACCCCGGACCAGATAGACCGCTACCGCAACAAACTGTCAGGTCCACTATTGGATCGCA
TTGATATGCAGGTGGAAGTGGGGACAATGAGCGCGGTGCAACTGCAGGATTCTCCTCCCGGAGAGTCATCTGAAAGAGTG
CGGGAGCGAGTCTGTAACGCCCGCCAACAGCAGTTGCAGCGGCAAGGGACGATCAACAGTCTGTTAAAAGGGGCACCGCT
GGAAAACCATTGCGCACTGGGAGATACCGAAAAACTGCTACTGCGACAGTCAGTAGAAAAACTTGGGCTTTCCGCACGCA
GTTACCATCGAGTGCTTAAAGTCGCGCGTACTCTGGCGGACCTCGCTAAACAGGAAAGAATTGGTACGGCACAAATTGCC
GAAGCGTTGGCTTACCGGAATCTAGACAGGCGCCAGGCAAGTGTTCAAACACATTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(394-486)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-385)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P9ERS0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.138

100

0.56
  comM Vibrio campbellii strain DS40M4

53.693

100

0.54
  comM Haemophilus influenzae Rd KW20

53.293

100

0.536
  comM Glaesserella parasuis strain SC1401

52.295

100

0.526
  comM Legionella pneumophila str. Paris

50.806

99.598

0.506
  comM Legionella pneumophila strain ERS1305867

50.806

99.598

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.733

100

0.474

Multiple sequence alignment