Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FIU98_RS02715 Genome accession   NZ_CP045359
Coordinates   578766..579830 (+) Length   354 a.a.
NCBI ID   WP_152487715.1    Uniprot ID   -
Organism   Pseudomonas sp. THAF42     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 573766..584830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU98_RS02705 (FIU98_02680) - 574819..576087 (+) 1269 WP_037049853.1 malic enzyme-like NAD(P)-binding protein -
  FIU98_RS02710 (FIU98_02685) - 576173..578581 (-) 2409 WP_371923226.1 penicillin-binding protein 1A -
  FIU98_RS02715 (FIU98_02690) comM 578766..579830 (+) 1065 WP_152487715.1 pilus assembly protein PilM Machinery gene
  FIU98_RS02720 (FIU98_02695) pilN 579830..580402 (+) 573 WP_152487716.1 type 4a pilus biogenesis protein PilN -
  FIU98_RS02725 (FIU98_02700) pilO 580399..581019 (+) 621 WP_152487717.1 type 4a pilus biogenesis protein PilO -
  FIU98_RS02730 (FIU98_02705) pilP 581019..581543 (+) 525 WP_152487718.1 type 4a pilus biogenesis lipoprotein PilP -
  FIU98_RS02735 (FIU98_02710) pilQ 581599..583707 (+) 2109 WP_152487719.1 type IV pilus secretin PilQ Machinery gene
  FIU98_RS02740 (FIU98_02715) aroK 583713..584231 (+) 519 WP_152487720.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37797.20 Da        Isoelectric Point: 4.4688

>NTDB_id=393630 FIU98_RS02715 WP_152487715.1 578766..579830(+) (comM) [Pseudomonas sp. THAF42]
MLGLFTKKANTLLGIDISSTSVKLLELSRSGSRYKVEAYAVEPLPPNAVVEKNIAELEGVGQALSRVLAKAKTGVKTAAV
AVAGSAVITKTIEMEAGLSEDELENQLKIEADQYIPYPLEEVAIDFEVQGPAPRNPERVEVLLAACRKENVEVREAALAL
AGVTAKVVDVEAYALERAYGLLEAQLGGGHDELTVAVVDIGATMTTLSVLHNGRTIYTREQLFGGKQLTEEIQRRYGLSV
EEAGLAKKQGGLPDDYDSEVLQPFKEAVVQQVSRSLQFFFAAGQFNDVDYILLAGGTASIPDLDRLIQQKIGTQTLVANP
FADMALSGKVNAGALASDAPALMIACGLAMRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=393630 FIU98_RS02715 WP_152487715.1 578766..579830(+) (comM) [Pseudomonas sp. THAF42]
GTGCTAGGGCTCTTCACTAAGAAAGCGAATACGCTGCTGGGGATCGATATCAGCTCGACTTCGGTCAAGCTCCTCGAACT
GAGTCGCTCGGGAAGCCGCTACAAGGTAGAGGCTTACGCAGTCGAGCCGCTCCCGCCGAACGCAGTAGTCGAAAAGAACA
TCGCCGAGCTGGAGGGGGTCGGTCAGGCGCTCTCGCGCGTGTTGGCCAAGGCCAAGACCGGCGTCAAGACCGCGGCAGTC
GCCGTCGCGGGATCGGCAGTCATCACCAAGACCATCGAGATGGAAGCGGGTCTTTCCGAGGACGAGCTGGAAAACCAGCT
GAAGATCGAAGCCGATCAGTACATTCCTTATCCGCTCGAAGAAGTCGCTATCGATTTCGAAGTGCAGGGCCCTGCGCCGC
GTAATCCGGAGCGGGTCGAAGTCCTGCTCGCGGCATGCCGCAAGGAGAACGTCGAGGTGCGCGAGGCGGCACTGGCGCTG
GCTGGCGTGACCGCCAAGGTGGTCGATGTCGAAGCCTATGCGCTCGAGCGTGCCTACGGCCTGCTGGAAGCGCAGCTCGG
TGGTGGTCATGACGAACTGACGGTCGCCGTGGTCGACATCGGTGCGACCATGACCACGCTCAGCGTGTTGCACAACGGGC
GCACCATCTATACCCGCGAGCAGCTCTTCGGTGGCAAGCAGCTGACCGAGGAAATTCAGCGTCGCTATGGTCTGTCGGTG
GAGGAAGCTGGTCTTGCCAAGAAGCAGGGTGGTCTTCCGGATGACTATGACAGCGAGGTCTTGCAGCCGTTCAAGGAAGC
CGTGGTTCAGCAAGTCTCGCGTTCGTTGCAGTTCTTCTTCGCTGCCGGCCAGTTCAACGATGTGGACTACATCCTCCTGG
CAGGCGGTACCGCGTCCATTCCGGATCTCGATCGGCTGATTCAGCAGAAGATCGGTACGCAGACGCTGGTAGCCAATCCC
TTTGCCGATATGGCGCTCAGCGGCAAGGTCAACGCCGGTGCACTGGCCAGTGATGCGCCGGCATTGATGATTGCCTGTGG
CCTGGCGATGAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

56.497

100

0.565
  pilM Acinetobacter baumannii D1279779

56.497

100

0.565
  comM Acinetobacter baylyi ADP1

53.39

100

0.534
  pilM Legionella pneumophila strain ERS1305867

44.915

100

0.449

Multiple sequence alignment