Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FIV01_RS00245 Genome accession   NZ_CP045350
Coordinates   58893..60416 (+) Length   507 a.a.
NCBI ID   WP_152431614.1    Uniprot ID   A0A5P9CFB3
Organism   Vibrio aquimaris strain THAF100     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 53893..65416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIV01_RS00230 (FIV01_00235) ilvE 55526..56455 (-) 930 WP_152429223.1 branched-chain-amino-acid transaminase -
  FIV01_RS00235 (FIV01_00240) ilvM 56468..56752 (-) 285 WP_114787740.1 acetolactate synthase 2 small subunit -
  FIV01_RS00240 (FIV01_00245) ilvG 56754..58400 (-) 1647 WP_152431613.1 acetolactate synthase 2 catalytic subunit -
  FIV01_RS00245 (FIV01_00250) comM 58893..60416 (+) 1524 WP_152431614.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FIV01_RS00250 (FIV01_00255) - 60444..61430 (-) 987 WP_152429224.1 DUF2860 domain-containing protein -
  FIV01_RS00255 (FIV01_00260) - 61640..62524 (+) 885 WP_152429225.1 acyltransferase -
  FIV01_RS00260 (FIV01_00265) - 62583..63185 (-) 603 WP_152429226.1 thiol:disulfide interchange protein DsbA/DsbL -
  FIV01_RS00265 (FIV01_00270) - 63216..64202 (-) 987 WP_152429227.1 serine/threonine protein kinase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55506.78 Da        Isoelectric Point: 7.9255

>NTDB_id=393552 FIV01_RS00245 WP_152431614.1 58893..60416(+) (comM) [Vibrio aquimaris strain THAF100]
MGLAIIYSRASVGVEAPQVAVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSRFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIPAEGLSSREFVGELALSGKLRRVKGVLPAALAAQKVKRRLVVPHYNGDQAALVGHDIHQSAASL
LEVCADICGQKALDLHQNMIQSQVVEQKRDLQDIIGQQQGKRALEIAAAGNHNVLFLGPPGTGKTMLASRLCDLLPDMTE
EEAMETASVASLTQQDINALNWKKRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYDDHHSRANPHIVLRYLSRLSGPLLDRFDMSIEIPALPKGTLSEGGER
GEPTEIVKTRVEQARHYMLERAGKVNALLGSREMEQYCPLEKQDAQFLEAALHQLGLSIRAYHRIIKVARTIADLDGKEH
IARHHIAEALGYRAMDRLLKQLTNQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=393552 FIV01_RS00245 WP_152431614.1 58893..60416(+) (comM) [Vibrio aquimaris strain THAF100]
ATGGGACTCGCGATTATTTATAGCAGGGCGTCGGTTGGCGTCGAAGCCCCTCAGGTAGCAGTTGAGGTGCACATCAGCAA
CGGTATGCCAGGTTTTACCTTGGTGGGATTGCCAGAAACGACAGTCAAAGAATCACGGGATAGAGTGAGAAGCGCGATTA
TCAACTCACGCTTTGAGTTTCCTGCGAAGCGAATTACGGTGAATTTAGCCCCAGCAGATTTACCCAAAGAGGGTGGAAGA
TTCGACTTACCTATTGCCCTTGGTATTCTCGCTGCCTCTGAGCAAATCCCTGCTGAGGGTTTATCCAGCCGCGAGTTTGT
TGGTGAATTAGCATTATCAGGCAAGCTGCGGCGAGTGAAAGGGGTTTTACCGGCAGCGTTAGCCGCCCAAAAGGTGAAAA
GACGCTTGGTTGTCCCCCATTACAACGGCGATCAAGCTGCATTGGTGGGACATGATATACATCAATCAGCGGCTAGTTTG
CTTGAAGTTTGCGCTGATATCTGTGGTCAAAAAGCACTAGATTTGCATCAAAACATGATTCAAAGCCAAGTTGTTGAACA
AAAACGCGATCTACAAGATATCATAGGCCAGCAGCAAGGGAAGCGAGCTCTGGAAATAGCCGCTGCGGGCAATCACAACG
TACTTTTTCTTGGTCCGCCAGGAACTGGTAAAACCATGTTGGCGTCACGCTTATGTGACTTATTGCCAGATATGACGGAA
GAAGAAGCAATGGAGACGGCTTCGGTGGCTTCTTTAACCCAGCAAGACATCAATGCGCTTAACTGGAAAAAACGGCCCTT
TCGTGCGCCGCACCATTCAAGTTCTATGGCTGCTTTGGTTGGCGGTGGAACTATTCCAAGGCCCGGAGAGATTTCGTTAG
CGCATAATGGTTTATTGTTTCTAGATGAAATGCCTGAATTTGAAAGAAAAGTGCTGGACTCGTTGCGAGAGCCATTGGAG
TCTGGAGAAATTATTATCTCTAGAGCTCAGGGAAAAACTCGCTTTCCAGCTCGTTTTCAATTGGTTGGCGCCTTAAACCC
AAGCCCTACAGGCTACTATGACGATCATCATTCAAGAGCCAATCCACACATTGTTTTGCGTTATTTGAGTCGCCTTTCTG
GTCCTTTGTTAGACCGCTTTGATATGTCTATCGAAATACCCGCACTACCCAAAGGCACCTTGTCTGAGGGAGGAGAGCGG
GGCGAGCCTACTGAAATTGTTAAAACTAGAGTTGAACAGGCAAGGCACTACATGCTAGAGAGAGCGGGTAAGGTTAATGC
GTTGCTCGGCAGTCGAGAAATGGAACAGTACTGCCCGCTTGAAAAACAAGACGCTCAATTTTTAGAAGCGGCTTTGCATC
AGCTTGGTTTGTCTATACGCGCGTATCATCGGATCATCAAAGTGGCTCGAACCATTGCAGATTTGGATGGTAAAGAACAT
ATAGCGCGTCATCACATAGCGGAAGCTTTGGGGTATAGAGCCATGGATCGTTTACTTAAACAGCTGACCAATCAAGCAGT
ATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P9CFB3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

82.84

100

0.828
  comM Vibrio campbellii strain DS40M4

81.854

100

0.819
  comM Haemophilus influenzae Rd KW20

64.567

100

0.647
  comM Glaesserella parasuis strain SC1401

62.622

100

0.631
  comM Legionella pneumophila str. Paris

47.984

97.83

0.469
  comM Legionella pneumophila strain ERS1305867

47.984

97.83

0.469
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.898

100

0.44

Multiple sequence alignment