Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ALIDE_RS21315 Genome accession   NC_014910
Coordinates   4490822..4491355 (+) Length   177 a.a.
NCBI ID   WP_013521028.1    Uniprot ID   A0A858ZYL6
Organism   Alicycliphilus denitrificans BC     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4485822..4496355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ALIDE_RS21305 (Alide_4284) uvrA 4486250..4489318 (-) 3069 WP_013521026.1 excinuclease ABC subunit UvrA -
  ALIDE_RS21310 (Alide_4285) - 4489501..4490679 (+) 1179 WP_013521027.1 MFS transporter -
  ALIDE_RS21315 (Alide_4286) ssb 4490822..4491355 (+) 534 WP_013521028.1 single-stranded DNA-binding protein Machinery gene
  ALIDE_RS21320 (Alide_4287) - 4491490..4492338 (+) 849 WP_013521029.1 IclR family transcriptional regulator -
  ALIDE_RS21325 (Alide_4288) - 4492348..4493529 (-) 1182 WP_013521030.1 CaiB/BaiF CoA transferase family protein -
  ALIDE_RS21330 (Alide_4289) - 4493540..4494523 (-) 984 WP_013521031.1 Bug family tripartite tricarboxylate transporter substrate binding protein -
  ALIDE_RS21335 (Alide_4290) - 4494558..4495001 (-) 444 WP_013521032.1 PaaI family thioesterase -
  ALIDE_RS21340 (Alide_4291) - 4495017..4495994 (-) 978 WP_013521033.1 tripartite tricarboxylate transporter substrate binding protein -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19064.04 Da        Isoelectric Point: 5.9603

>NTDB_id=39350 ALIDE_RS21315 WP_013521028.1 4490822..4491355(+) (ssb) [Alicycliphilus denitrificans BC]
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVRIATTDRWRDKNTGENKEATEWHSVVFNGRLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQSGQERYTTEIRADTMQMLGSRQGQGGAGGGYDDGGYGEGGGYEAPRRAAPAPRPAPPAARPAPAPAPAAQ
PPRAASGFDDMDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=39350 ALIDE_RS21315 WP_013521028.1 4490822..4491355(+) (ssb) [Alicycliphilus denitrificans BC]
ATGGCATCCGTCAACAAAGTCATCATCGTCGGCAACCTCGGCCGCGACCCCGAAATGCGCACCTTCCCCAGCGGCGACCA
GGTGGCCAACGTGCGCATCGCCACCACCGACCGCTGGCGCGACAAGAACACCGGCGAGAACAAGGAAGCCACCGAGTGGC
ACAGCGTGGTCTTCAACGGCCGCCTGGCCGAGATCGTGGGCCAGTACCTGCGCAAGGGCTCGCAGGTGTACGTGGAAGGC
AGCCTGCGCACGCGCAAGTGGACCGACCAGAGCGGCCAGGAGCGCTACACCACCGAGATCCGCGCCGACACCATGCAGAT
GCTGGGCAGCCGCCAGGGCCAGGGCGGCGCTGGCGGCGGCTATGACGACGGCGGCTACGGCGAGGGCGGCGGCTACGAGG
CCCCGCGCCGCGCCGCGCCCGCGCCGCGCCCGGCCCCGCCCGCGGCCCGCCCGGCTCCGGCCCCAGCCCCCGCGGCCCAG
CCGCCGCGCGCGGCGTCGGGCTTTGACGACATGGATGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A858ZYL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.105

100

0.559
  ssb Vibrio cholerae strain A1552

51.337

100

0.542
  ssb Neisseria gonorrhoeae MS11

46.893

100

0.469
  ssb Neisseria meningitidis MC58

45.763

100

0.458

Multiple sequence alignment