Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   STND_RS00225 Genome accession   NC_017563
Coordinates   30632..31405 (+) Length   257 a.a.
NCBI ID   WP_014607822.1    Uniprot ID   -
Organism   Streptococcus thermophilus ND03     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 25632..36405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STND_RS00205 (STND_0020) - 25703..27184 (+) 1482 WP_014607819.1 PcsB-like coiled-coil domain-containing protein -
  STND_RS00210 (STND_0021) - 27398..28363 (+) 966 WP_002948994.1 ribose-phosphate diphosphokinase -
  STND_RS09745 - 28412..29257 (-) 846 Protein_19 transposase -
  STND_RS00220 (STND_0023) - 29470..30645 (+) 1176 WP_014607821.1 pyridoxal phosphate-dependent aminotransferase -
  STND_RS00225 (STND_0024) recO 30632..31405 (+) 774 WP_014607822.1 DNA repair protein RecO Machinery gene
  STND_RS00230 (STND_0025) plsX 31622..32626 (+) 1005 WP_011680588.1 phosphate acyltransferase PlsX -
  STND_RS00235 (STND_0026) - 32626..32871 (+) 246 WP_002949008.1 phosphopantetheine-binding protein -
  STND_RS00240 (STND_0027) purC 33157..33864 (+) 708 WP_011226729.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29803.03 Da        Isoelectric Point: 5.0766

>NTDB_id=39350 STND_RS00225 WP_014607822.1 30632..31405(+) (recO) [Streptococcus thermophilus ND03]
MQKLESRGFILFNRNYRENDKLVKIFTKQAGKRMFFVRGGGSGKLSAVIQPLNIAEFMMTVNDEGLSFIEDYSQAESFKE
ITSDIFKLSYATYLAALTDAAIADGVVDAQLFAFLEKTLVLMEEGLDYEILTNIFEIQVLDRFGVRLNFHECVFCHRVGL
PFDFSYKFSGLLCPNHYEEDERRSHLDPNVPYLLDRFQGLSFEELRSISVKDEMKRKLRQFIDELYDNYVGIHLKSKKFI
DNLNSWGHIMSKEDSAD

Nucleotide


Download         Length: 774 bp        

>NTDB_id=39350 STND_RS00225 WP_014607822.1 30632..31405(+) (recO) [Streptococcus thermophilus ND03]
ATGCAGAAGCTTGAGAGTAGGGGGTTTATCCTCTTCAATCGTAATTATCGTGAGAATGATAAGCTGGTTAAGATTTTTAC
TAAACAAGCTGGTAAACGGATGTTTTTTGTTAGAGGTGGTGGGTCAGGTAAATTGAGTGCTGTGATTCAACCTTTAAACA
TCGCTGAATTTATGATGACTGTAAATGATGAAGGTTTATCTTTCATAGAGGATTATAGTCAGGCAGAGTCTTTTAAGGAA
ATTACAAGTGATATTTTTAAACTGTCTTACGCGACCTATTTAGCTGCCTTGACTGATGCTGCTATTGCTGACGGTGTGGT
AGATGCACAATTATTTGCATTTTTAGAGAAAACCCTTGTGTTAATGGAAGAGGGCTTAGATTATGAAATATTGACTAATA
TCTTTGAGATTCAAGTTTTGGACCGTTTTGGCGTACGATTGAATTTTCATGAATGTGTCTTTTGTCATCGTGTTGGTCTT
CCTTTTGATTTCTCGTATAAGTTCTCAGGTTTACTTTGTCCCAATCATTACGAAGAAGATGAAAGGCGTAGTCATTTGGA
CCCTAATGTGCCTTATCTTTTGGATCGTTTCCAGGGTCTTTCGTTTGAAGAATTGAGAAGCATATCTGTTAAGGATGAAA
TGAAACGAAAGTTGAGACAATTTATTGATGAGCTTTATGATAATTATGTTGGGATTCATCTTAAAAGCAAGAAGTTTATT
GATAATCTAAATTCTTGGGGTCATATTATGAGTAAAGAAGATAGTGCTGATTAA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

61.66

98.444

0.607

Multiple sequence alignment