Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FIV04_RS01535 Genome accession   NZ_CP045338
Coordinates   332937..333485 (+) Length   182 a.a.
NCBI ID   WP_032552989.1    Uniprot ID   A0A066URH4
Organism   Vibrio sp. THAF190c     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 327937..338485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIV04_RS01520 (FIV04_01535) uvrA 328014..330845 (-) 2832 WP_152468072.1 excinuclease ABC subunit UvrA -
  FIV04_RS01525 (FIV04_01540) galU 330985..331857 (-) 873 WP_150895903.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  FIV04_RS01530 (FIV04_01545) qstR 332008..332655 (-) 648 WP_152468073.1 LuxR C-terminal-related transcriptional regulator Regulator
  FIV04_RS01535 (FIV04_01550) ssb 332937..333485 (+) 549 WP_032552989.1 single-stranded DNA-binding protein Machinery gene
  FIV04_RS01540 (FIV04_01555) csrD 333648..335663 (+) 2016 WP_152468074.1 RNase E specificity factor CsrD -
  FIV04_RS01545 (FIV04_01560) - 335666..337099 (+) 1434 WP_152468075.1 MSHA biogenesis protein MshI -
  FIV04_RS01550 (FIV04_01565) pilO 337102..337749 (+) 648 WP_152468076.1 type 4a pilus biogenesis protein PilO -
  FIV04_RS01555 (FIV04_01570) - 337742..338077 (+) 336 WP_152468077.1 MSHA biogenesis protein MshK -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20004.07 Da        Isoelectric Point: 4.9269

>NTDB_id=393476 FIV04_RS01535 WP_032552989.1 332937..333485(+) (ssb) [Vibrio sp. THAF190c]
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGGQQQQGGWGQPQQPQQQQYSAPAQQQAPQQQ
APQQAQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=393476 FIV04_RS01535 WP_032552989.1 332937..333485(+) (ssb) [Vibrio sp. THAF190c]
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCTGAAATTCGTTACATGCCAAATGG
CGGTGCAGTAGCGAACATTACCATTGCAACGTCAGAATCATGGCGTGATAAAGCAACTGGCGAACAGCGCGAGAAAACAG
AATGGCACCGTGTGGCTCTGTTTGGCAAGCTGGCAGAAGTTGCAGGTGAATACCTACGTAAAGGTTCTCAAGTTTACATT
GAAGGCCAACTGCAAACGCGTAAATGGCAAGATCAAAGCGGTCAAGATCGCTACACAACGGAAGTTGTTGTTCAAGGCTT
TAACGGCGTAATGCAAATGCTAGGCGGTCGTGCTCAAGGTGGCGCACCAGCTCAAGGCGGTATGGGTGGTCAACAGCAGC
AAGGTGGTTGGGGTCAACCTCAGCAACCACAACAGCAGCAATACAGTGCACCTGCTCAGCAGCAAGCACCTCAACAACAA
GCTCCACAACAGGCTCAACCTCAATACAATGAGCCACCAATGGATTTTGATGACGACATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A066URH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

82.514

100

0.83
  ssb Glaesserella parasuis strain SC1401

54.974

100

0.577
  ssb Neisseria meningitidis MC58

47.514

99.451

0.473
  ssb Neisseria gonorrhoeae MS11

47.514

99.451

0.473

Multiple sequence alignment