Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   FIV04_RS01530 Genome accession   NZ_CP045338
Coordinates   332008..332655 (-) Length   215 a.a.
NCBI ID   WP_152468073.1    Uniprot ID   A0A5P9B3K3
Organism   Vibrio sp. THAF190c     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 327008..337655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIV04_RS01520 (FIV04_01535) uvrA 328014..330845 (-) 2832 WP_152468072.1 excinuclease ABC subunit UvrA -
  FIV04_RS01525 (FIV04_01540) galU 330985..331857 (-) 873 WP_150895903.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  FIV04_RS01530 (FIV04_01545) qstR 332008..332655 (-) 648 WP_152468073.1 LuxR C-terminal-related transcriptional regulator Regulator
  FIV04_RS01535 (FIV04_01550) ssb 332937..333485 (+) 549 WP_032552989.1 single-stranded DNA-binding protein Machinery gene
  FIV04_RS01540 (FIV04_01555) csrD 333648..335663 (+) 2016 WP_152468074.1 RNase E specificity factor CsrD -
  FIV04_RS01545 (FIV04_01560) - 335666..337099 (+) 1434 WP_152468075.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25126.48 Da        Isoelectric Point: 9.3450

>NTDB_id=393475 FIV04_RS01530 WP_152468073.1 332008..332655(-) (qstR) [Vibrio sp. THAF190c]
MKVSRYTRTLHFLCLDLEQTHLYINEIENLLSIPMYRMPPGEIMCINKKQSNRILLVDYKQLPDMFQAFPNLAVLWKNFE
IILFNVEKPLQTQEIIRFGHLKGLFYCSDTKPKIAEGITRIINGENWLPRKITSQLLFYYRNIVNISTCPVTVDLTIREL
QVIRCLQTGASNTQIAEDLFISEFTVKSHLYQIFRKLAVKNRGQAIAWANQNLIS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=393475 FIV04_RS01530 WP_152468073.1 332008..332655(-) (qstR) [Vibrio sp. THAF190c]
ATGAAAGTATCGAGGTATACTCGCACATTACACTTTTTATGCTTAGACCTAGAACAGACTCATCTGTACATCAATGAGAT
AGAAAATTTACTTTCTATTCCAATGTATAGAATGCCTCCAGGAGAGATAATGTGCATCAACAAAAAGCAGAGCAATCGAA
TCCTCTTGGTCGATTACAAGCAACTGCCTGACATGTTTCAGGCTTTCCCTAATCTTGCTGTACTGTGGAAGAACTTTGAA
ATCATTCTTTTCAATGTCGAAAAGCCACTGCAGACTCAAGAGATCATCCGCTTTGGGCACTTAAAAGGGTTGTTCTACTG
CAGCGATACCAAACCGAAAATAGCTGAAGGCATCACAAGGATCATTAATGGAGAGAATTGGTTACCAAGAAAGATCACCA
GCCAATTGCTGTTCTACTATCGCAATATCGTCAACATCAGCACTTGCCCTGTTACGGTCGATTTAACTATCCGAGAGTTA
CAGGTGATTCGCTGCCTACAAACTGGCGCTTCGAATACCCAGATCGCAGAAGATCTGTTTATCAGTGAATTCACAGTCAA
ATCCCATCTTTATCAAATCTTTCGTAAACTGGCTGTAAAGAATCGAGGGCAAGCTATAGCGTGGGCAAACCAGAACCTAA
TTTCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P9B3K3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

52.558

100

0.526
  qstR Vibrio parahaemolyticus RIMD 2210633

51.163

100

0.512
  qstR Vibrio cholerae strain A1552

49.065

99.535

0.488

Multiple sequence alignment