Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GC132_RS01610 Genome accession   NZ_CP045312
Coordinates   335025..335549 (+) Length   174 a.a.
NCBI ID   WP_003860284.1    Uniprot ID   A0A9Q2WCG9
Organism   Enterobacter hormaechei strain 14102KSN     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 335025..344378 335025..335549 within 0


Gene organization within MGE regions


Location: 335025..344378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GC132_RS01610 ssb 335025..335549 (+) 525 WP_003860284.1 single-stranded DNA-binding protein SSB1 Machinery gene
  GC132_RS01615 - 335708..336955 (+) 1248 WP_063857632.1 tyrosine-type recombinase/integrase -
  GC132_RS01620 - 336945..338468 (+) 1524 WP_148752286.1 site-specific integrase -
  GC132_RS01625 - 338497..340530 (+) 2034 WP_063958662.1 hypothetical protein -
  GC132_RS01630 - 340523..340942 (+) 420 WP_063857686.1 hypothetical protein -
  GC132_RS01635 drt3a 340994..342343 (+) 1350 WP_063857687.1 antiviral reverse transcriptase Drt3a -
  GC132_RS01640 drt3b 342336..344378 (+) 2043 WP_063857688.1 antiviral reverse transcriptase Drt3b -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18650.66 Da        Isoelectric Point: 5.2456

>NTDB_id=393407 GC132_RS01610 WP_003860284.1 335025..335549(+) (ssb) [Enterobacter hormaechei strain 14102KSN]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=393407 GC132_RS01610 WP_003860284.1 335025..335549(+) (ssb) [Enterobacter hormaechei strain 14102KSN]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCTGAAGTGGCCGGTGAGTATCTGCGTAAGGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGAAAAATACACCACGGAAGTGGTGGTCAACGTAGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGCGGTGGCGCACCGGCAGGTGGCGGCCAACAGCAGGGCGGTTGGGGTC
AGCCTCAACAGCCTCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGTCCTCAGCAGCAGTCTGCTCCGGCACCG
TCTAACGAACCGCCAATGGACTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.667

100

0.793
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.609
  ssb Neisseria meningitidis MC58

47.191

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.374

Multiple sequence alignment