Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GCB94_RS15130 Genome accession   NZ_CP045306
Coordinates   3190987..3192495 (+) Length   502 a.a.
NCBI ID   WP_003635237.1    Uniprot ID   -
Organism   Legionella longbeachae strain B1445CHC     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3185987..3197495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GCB94_RS15105 (GCB94_15035) - 3188109..3188930 (-) 822 WP_003635248.1 aminotransferase class IV -
  GCB94_RS15110 (GCB94_15040) - 3188985..3189179 (-) 195 WP_003635246.1 hypothetical protein -
  GCB94_RS15115 (GCB94_15045) - 3189445..3190023 (+) 579 WP_003635244.1 5-formyltetrahydrofolate cyclo-ligase -
  GCB94_RS15120 (GCB94_15050) - 3190058..3190399 (-) 342 WP_003635241.1 P-II family nitrogen regulator -
  GCB94_RS15125 (GCB94_15055) - 3190506..3190763 (+) 258 WP_003635238.1 accessory factor UbiK family protein -
  GCB94_RS15130 (GCB94_15060) comM 3190987..3192495 (+) 1509 WP_003635237.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GCB94_RS15135 (GCB94_15065) - 3192550..3193863 (-) 1314 WP_003635235.1 glycosyltransferase family 87 protein -
  GCB94_RS15140 (GCB94_15070) - 3193913..3194803 (-) 891 WP_003635233.1 aspartate carbamoyltransferase catalytic subunit -
  GCB94_RS15145 (GCB94_15075) ruvX 3194910..3195329 (-) 420 WP_003635231.1 Holliday junction resolvase RuvX -
  GCB94_RS15150 (GCB94_15080) - 3195322..3195885 (-) 564 WP_003635227.1 YqgE/AlgH family protein -
  GCB94_RS15155 (GCB94_15085) - 3196104..3196775 (+) 672 WP_003635225.1 TIGR00153 family protein -

Sequence

Protein


Download         Length: 502 a.a.        Molecular weight: 55225.80 Da        Isoelectric Point: 8.2054

>NTDB_id=393327 GCB94_RS15130 WP_003635237.1 3190987..3192495(+) (comM) [Legionella longbeachae strain B1445CHC]
MNLAFTKARSTIGMLAHPVSVEVHLSNGLPGFTIVGLAETAVKESKDRVRSAIVNSQFEFPCRKITVNLGPADLPKTGSG
FDLPIALGILAASHQIPQDKLSHHEFIAELALNGELRGISSIIPAILAVHKDKNLLIIAKANAYEASLTGYQNIYSANNL
REICSYLCQNTPLSSLPPKPEACTTQYGFDWSDIKGQLHAKKAMEIAACGGHNILLSGAPGSGKTMLAKRFITLLPQLSE
TEALECVAVNSLRGKLPDFREWRSPPFRAPHHTASTVSLVGGGNPPKPGEISLAHQGVLFLDELPEFKRQVLETLRQPLE
SGSICISRAAVQMEFPAKFQLIAAMNPCPCGQLGNPYANCLCTPDRIKSYHAKISAPLMDRIDMHICVQALSQEELVAPN
DSPHQQSELIREKVIKIRSRQLERQNCLNAFLSARECEEVCRTGIEEQHFLTQFMTRMQLSARGYHRLLKVARTIADIDN
SPNVCLHHLQQAVSFKHNLHIK

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=393327 GCB94_RS15130 WP_003635237.1 3190987..3192495(+) (comM) [Legionella longbeachae strain B1445CHC]
ATGAATCTTGCATTTACCAAAGCACGTAGCACCATAGGGATGTTAGCACATCCCGTCTCCGTAGAAGTCCATTTATCAAA
TGGTTTGCCCGGATTTACCATAGTAGGCCTCGCCGAAACTGCTGTAAAAGAAAGTAAGGATAGAGTCCGCTCTGCTATCG
TCAATAGCCAATTCGAATTCCCTTGTCGTAAAATTACAGTAAATCTTGGTCCTGCTGATTTACCTAAAACAGGAAGCGGC
TTCGATTTACCGATAGCTCTTGGTATTCTTGCTGCCTCTCACCAAATTCCCCAAGATAAATTAAGCCATCATGAGTTCAT
TGCTGAACTCGCTTTAAATGGAGAACTTAGGGGTATTTCTTCCATTATTCCTGCGATCCTTGCGGTGCATAAAGACAAAA
ATTTACTCATTATTGCTAAAGCCAATGCCTATGAGGCTTCTTTAACTGGATATCAAAATATTTATAGCGCAAATAATTTG
CGCGAAATCTGCAGCTATCTTTGTCAAAACACCCCTTTGTCATCCCTCCCCCCAAAACCAGAAGCCTGCACTACACAGTA
TGGATTCGATTGGTCTGACATCAAGGGACAGTTGCATGCAAAAAAAGCGATGGAAATCGCTGCTTGTGGAGGACACAATA
TTCTGCTTAGTGGTGCTCCTGGAAGTGGCAAGACCATGTTAGCAAAAAGGTTTATTACTTTATTGCCCCAATTATCTGAA
ACAGAAGCGCTCGAGTGTGTAGCTGTCAATTCCCTGCGTGGTAAGTTACCTGATTTTCGTGAATGGCGTTCCCCTCCTTT
TCGTGCCCCTCATCATACAGCGTCAACAGTATCCTTAGTTGGTGGCGGAAACCCACCTAAACCAGGAGAAATTTCTTTAG
CACATCAAGGAGTCTTATTTCTGGATGAATTACCTGAATTCAAACGCCAAGTTTTAGAAACCTTGAGGCAACCCCTGGAG
TCGGGTTCAATATGTATTTCTCGGGCTGCAGTTCAGATGGAATTTCCAGCTAAATTTCAGCTTATTGCAGCAATGAATCC
TTGCCCATGTGGTCAATTAGGCAATCCATATGCGAACTGCCTATGTACCCCTGATCGCATTAAAAGTTATCATGCCAAGA
TATCAGCACCCCTGATGGATAGAATTGACATGCATATTTGTGTACAAGCACTATCCCAGGAAGAATTAGTTGCTCCCAAT
GATAGTCCTCATCAACAAAGTGAATTAATTAGAGAGAAAGTAATCAAAATAAGATCAAGACAATTGGAGCGGCAAAATTG
CCTTAATGCCTTTTTAAGTGCAAGAGAGTGTGAGGAAGTTTGTAGGACAGGAATCGAGGAACAGCATTTTTTAACTCAAT
TTATGACGCGAATGCAACTGTCTGCACGAGGATATCATCGTCTACTTAAAGTAGCACGAACGATAGCAGATATAGATAAC
AGCCCTAATGTATGCCTCCATCACTTACAACAAGCCGTATCGTTTAAGCATAATCTACATATTAAATGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-395)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-496)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Legionella pneumophila strain ERS1305867

75.05

99.801

0.749
  comM Legionella pneumophila str. Paris

75.05

99.801

0.749
  comM Haemophilus influenzae Rd KW20

50

99.602

0.498
  comM Vibrio campbellii strain DS40M4

48.893

99.004

0.484
  comM Vibrio cholerae strain A1552

48.79

98.805

0.482
  comM Glaesserella parasuis strain SC1401

47.094

99.402

0.468
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.485

99.402

0.422

Multiple sequence alignment