Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GCU53_RS14895 Genome accession   NZ_CP045302
Coordinates   3221384..3222877 (-) Length   497 a.a.
NCBI ID   WP_152388305.1    Uniprot ID   -
Organism   Azotobacter salinestris strain KACC 13899     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3216384..3227877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GCU53_RS14870 - 3217679..3218407 (-) 729 WP_152388300.1 pirin family protein -
  GCU53_RS14875 - 3218456..3218878 (-) 423 WP_152388301.1 DoxX family protein -
  GCU53_RS14880 - 3218996..3219877 (+) 882 WP_152388302.1 LysR family transcriptional regulator -
  GCU53_RS14885 - 3219988..3220425 (+) 438 WP_152388303.1 NfeD family protein -
  GCU53_RS14890 - 3220454..3221317 (+) 864 WP_152388304.1 SPFH domain-containing protein -
  GCU53_RS14895 comM 3221384..3222877 (-) 1494 WP_152388305.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GCU53_RS14900 - 3222909..3223184 (-) 276 WP_152388306.1 accessory factor UbiK family protein -
  GCU53_RS14905 glnK 3223550..3223888 (+) 339 WP_012703245.1 P-II family nitrogen regulator -
  GCU53_RS14910 - 3223925..3225241 (+) 1317 WP_152388307.1 ammonium transporter -
  GCU53_RS14915 - 3225398..3225823 (+) 426 WP_152388308.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  GCU53_RS14920 sutA 3225947..3226267 (+) 321 WP_152388309.1 transcriptional regulator SutA -
  GCU53_RS14925 - 3226334..3227146 (-) 813 WP_244306786.1 CPBP family intramembrane glutamic endopeptidase -
  GCU53_RS14930 - 3227152..3227853 (-) 702 WP_152388310.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52286.06 Da        Isoelectric Point: 7.5087

>NTDB_id=393281 GCU53_RS14895 WP_152388305.1 3221384..3222877(-) (comM) [Azotobacter salinestris strain KACC 13899]
MSLAIVHSRAQVGVEAPAVTVEAHLANGLPALTLVGLPETAVRESKDRVRSAILTSGFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASEQLPAEALASLECLGELALSGSLRPVRGVLPAALAARAAGRTLVVPQANAEEASLASGLTVLAVDHL
LELAAHLNGQTLLAPYQAQGLLRQAPPYPDLAEVQGQAAAKRALLVAAAGSHNLLLSGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIHSVAGSAPLAAWPQRPFRQPHHSASGPALVGGGSRPRPGEITLAHQGVLFLDELPEFDRKVLEVLREPLES
GEIVIARASDKVRFPARFQLVAAMNPCPCGYQGDPAGRCRCTPEQIQRYRAKLSGPLLDRIDLHIGVAREATALGVPRLD
GPDSASAAAQVAAARNRQLARQGCPNAFLDLPGLHQYCALNDQDRQWLERACERLGLSLRAAHRILKVARTLADLEAAPD
IARAHLAEALQYRASSA

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=393281 GCU53_RS14895 WP_152388305.1 3221384..3222877(-) (comM) [Azotobacter salinestris strain KACC 13899]
GTGTCCCTGGCCATCGTCCACAGCCGCGCCCAGGTGGGCGTCGAGGCGCCCGCCGTCACCGTGGAGGCGCACCTGGCCAA
CGGCCTGCCGGCGCTGACCCTGGTCGGCCTGCCGGAAACCGCGGTCCGCGAGAGCAAAGACCGCGTGCGCAGCGCCATCC
TCACCTCCGGCTTCGACTTCCCGGCGCGGCGCATCACCCTCAATCTGGCGCCCGCCGACCTGCCCAAGGACGGCGGCCGC
TTCGACCTGGCCATCGCCCTGGGCATCCTCGCCGCCAGCGAGCAGTTGCCCGCCGAGGCCCTGGCCAGCCTGGAATGCCT
GGGCGAGCTGGCCCTCTCCGGCAGCCTGCGCCCGGTCCGGGGCGTACTGCCCGCCGCGCTGGCTGCCCGCGCTGCCGGAC
GCACACTTGTGGTGCCGCAGGCGAACGCCGAGGAGGCCAGCCTCGCCTCGGGCCTGACCGTGCTGGCAGTCGACCACCTG
CTGGAGCTGGCCGCACACCTGAACGGCCAGACGCTCCTTGCGCCCTACCAGGCCCAGGGCCTGCTGCGTCAGGCGCCACC
CTATCCCGACCTCGCCGAAGTGCAGGGCCAGGCCGCGGCCAAGCGCGCCCTGCTGGTGGCCGCCGCCGGCTCTCACAATC
TGCTTCTGAGCGGGCCTCCCGGAACCGGCAAGACCCTCCTGGCCAGCCGCCTGCCGGGCCTGCTGCCGCCCTTGGACGAA
CACGAGGCGCTGGAGGTGGCGGCGATTCATTCGGTGGCCGGCAGCGCGCCGCTCGCGGCCTGGCCGCAGCGGCCGTTCCG
CCAGCCCCACCACAGCGCCTCGGGACCGGCGCTGGTCGGCGGTGGCAGCCGGCCGCGCCCCGGCGAGATCACCCTGGCGC
ACCAGGGCGTACTGTTTCTCGACGAGTTGCCGGAATTCGATCGCAAGGTGCTGGAGGTGCTGCGCGAGCCCCTGGAAAGC
GGCGAGATCGTCATCGCCCGGGCCAGCGACAAGGTGCGCTTTCCAGCGCGCTTCCAGCTGGTCGCGGCGATGAACCCCTG
CCCCTGCGGCTACCAAGGCGACCCCGCCGGCCGCTGCCGCTGCACCCCGGAGCAGATCCAGCGCTACCGTGCCAAGCTGT
CCGGTCCGCTGCTCGACCGCATCGACCTGCACATCGGCGTCGCCCGCGAGGCCACCGCCCTGGGCGTGCCGCGCCTGGAC
GGCCCGGATAGCGCTAGCGCCGCGGCCCAGGTGGCGGCGGCGCGCAACCGCCAGCTCGCCCGCCAGGGCTGCCCCAATGC
GTTCCTCGACCTGCCCGGTTTGCACCAATACTGCGCACTGAATGACCAAGACCGCCAGTGGCTGGAGCGCGCCTGCGAAC
GCCTCGGCCTGTCGCTGCGTGCCGCTCACCGCATCCTCAAGGTGGCGCGGACCCTGGCCGATCTGGAGGCGGCGCCGGAC
ATCGCCCGCGCCCACCTGGCCGAAGCCCTGCAGTACCGGGCCAGCAGCGCCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

57.058

100

0.577
  comM Vibrio cholerae strain A1552

57.229

100

0.573
  comM Haemophilus influenzae Rd KW20

55.378

100

0.559
  comM Glaesserella parasuis strain SC1401

54.89

100

0.553
  comM Legionella pneumophila str. Paris

49.609

100

0.511
  comM Legionella pneumophila strain ERS1305867

49.609

100

0.511
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.328

100

0.459

Multiple sequence alignment