Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | GCU50_RS13980 | Genome accession | NZ_CP045300 |
| Coordinates | 2814862..2815383 (-) | Length | 173 a.a. |
| NCBI ID | WP_090121848.1 | Uniprot ID | A0A1I7BZ39 |
| Organism | Kosakonia arachidis strain KACC 18508 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2809862..2820383
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GCU50_RS13955 | - | 2810712..2811476 (-) | 765 | WP_090121853.1 | IclR family transcriptional regulator | - |
| GCU50_RS13960 | - | 2811852..2812547 (+) | 696 | WP_007372446.1 | amino acid ABC transporter permease | - |
| GCU50_RS13965 | - | 2812525..2813292 (+) | 768 | WP_090121852.1 | amino acid ABC transporter ATP-binding protein | - |
| GCU50_RS13970 | - | 2813317..2814090 (+) | 774 | WP_090122719.1 | amino acid ABC transporter substrate-binding protein | - |
| GCU50_RS13975 | - | 2814258..2814800 (+) | 543 | WP_090121850.1 | chorismate mutase | - |
| GCU50_RS13980 | ssb | 2814862..2815383 (-) | 522 | WP_090121848.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| GCU50_RS13985 | uvrA | 2815648..2818473 (+) | 2826 | WP_090121846.1 | excinuclease ABC subunit UvrA | - |
| GCU50_RS13990 | - | 2818477..2818845 (-) | 369 | WP_090121842.1 | MmcQ/YjbR family DNA-binding protein | - |
| GCU50_RS13995 | - | 2818848..2819264 (-) | 417 | WP_090121840.1 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
| GCU50_RS14000 | aphA | 2819334..2820044 (-) | 711 | WP_090121838.1 | acid phosphatase AphA | - |
Sequence
Protein
Download Length: 173 a.a. Molecular weight: 18653.66 Da Isoelectric Point: 5.2456
>NTDB_id=393245 GCU50_RS13980 WP_090121848.1 2814862..2815383(-) (ssb) [Kosakonia arachidis strain KACC 18508]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGSAPATGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAPS
NEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGSAPATGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAPS
NEPPMDFDDDIPF
Nucleotide
Download Length: 522 bp
>NTDB_id=393245 GCU50_RS13980 WP_090121848.1 2814862..2815383(-) (ssb) [Kosakonia arachidis strain KACC 18508]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGCGACAAGCAGACCGGGGAAATGAAAGAGCAGACAG
AGTGGCACCGCGTTGTGCTGTTCGGCAAGCTGGCGGAAGTGGCCGGTGAGTATCTGCGTAAGGGTTCTCAGGTTTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGTCAGGAAAAATACACTACGGAAGTGGTGGTGAACGTGGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGCAGCGCACCTGCTACTGGTGGTCAGCAGCAGGGCGGTTGGGGCC
AGCCTCAGCAGCCGCAGGGCGGTAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGTCCGCTCCGGCACCGTCT
AACGAACCGCCTATGGATTTCGACGACGATATCCCGTTCTGA
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGCGACAAGCAGACCGGGGAAATGAAAGAGCAGACAG
AGTGGCACCGCGTTGTGCTGTTCGGCAAGCTGGCGGAAGTGGCCGGTGAGTATCTGCGTAAGGGTTCTCAGGTTTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGTCAGGAAAAATACACTACGGAAGTGGTGGTGAACGTGGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGCAGCGCACCTGCTACTGGTGGTCAGCAGCAGGGCGGTTGGGGCC
AGCCTCAGCAGCCGCAGGGCGGTAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGTCCGCTCCGGCACCGTCT
AACGAACCGCCTATGGATTTCGACGACGATATCCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
74.86 |
100 |
0.775 |
| ssb | Glaesserella parasuis strain SC1401 |
57.377 |
100 |
0.607 |
| ssb | Neisseria meningitidis MC58 |
44.693 |
100 |
0.462 |
| ssb | Neisseria gonorrhoeae MS11 |
44.693 |
100 |
0.462 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
36.111 |
100 |
0.376 |