Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   GXM_RS05615 Genome accession   NZ_CP045226
Coordinates   1251976..1252341 (+) Length   121 a.a.
NCBI ID   WP_069073698.1    Uniprot ID   A0A2D0HCN5
Organism   Nostoc sphaeroides CCNUC1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1246976..1257341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GXM_RS05595 (GXM_01388) - 1247447..1247746 (+) 300 WP_152590697.1 type II toxin-antitoxin system HigB family toxin -
  GXM_RS05600 (GXM_01389) - 1247730..1248131 (+) 402 WP_118162523.1 helix-turn-helix domain-containing protein -
  GXM_RS05605 (GXM_01390) hmpF 1248245..1250002 (-) 1758 WP_152588427.1 pilus motility taxis protein HmpF -
  GXM_RS05610 (GXM_01391) - 1250536..1251714 (+) 1179 WP_118162518.1 response regulator -
  GXM_RS05615 (GXM_01392) pilH 1251976..1252341 (+) 366 WP_069073698.1 response regulator transcription factor Machinery gene
  GXM_RS05620 (GXM_01393) - 1252355..1252885 (+) 531 WP_118162516.1 chemotaxis protein CheW -
  GXM_RS05625 (GXM_01394) - 1252900..1255830 (+) 2931 WP_152590698.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13350.52 Da        Isoelectric Point: 4.8604

>NTDB_id=392832 GXM_RS05615 WP_069073698.1 1251976..1252341(+) (pilH) [Nostoc sphaeroides CCNUC1]
MSTVLIVEDSIAQREMITDLLKATGLTVTHASDGLEALEAIQIAPPDLVVLDIVMPRMNGYEVCRRLKSDPKTQNVPVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=392832 GXM_RS05615 WP_069073698.1 1251976..1252341(+) (pilH) [Nostoc sphaeroides CCNUC1]
ATGAGTACAGTTCTGATAGTGGAAGACAGTATCGCGCAACGGGAGATGATTACAGACCTCCTGAAAGCAACTGGACTAAC
AGTAACCCATGCCAGTGACGGATTAGAAGCATTGGAGGCAATTCAAATAGCACCTCCCGATTTAGTGGTATTGGATATTG
TCATGCCCCGAATGAACGGCTACGAAGTTTGTCGGCGCTTAAAATCCGATCCAAAAACCCAAAATGTCCCTGTGGTGATG
TGTTCTTCCAAAGGCGAAGAATTTGATCGTTATTGGGGCATGAAGCAGGGTGCAGACGCTTACATAGCCAAACCGTTTCA
ACCAACCGAGTTGGTGGGAACAGTCAAACAACTGCTGCGAGGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2D0HCN5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

76.86

100

0.769
  micA Streptococcus pneumoniae Cp1015

39.167

99.174

0.388
  pilG Acinetobacter baumannii strain A118

41.228

94.215

0.388
  vicR Streptococcus mutans UA159

38.333

99.174

0.38
  pilL-C Synechocystis sp. PCC 6803

37.5

99.174

0.372

Multiple sequence alignment