Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GAY20_RS18595 Genome accession   NZ_CP045216
Coordinates   3920973..3921515 (-) Length   180 a.a.
NCBI ID   WP_021507842.1    Uniprot ID   -
Organism   Pantoea dispersa strain BJQ0007     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3915973..3926515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GAY20_RS18565 (GAY20_18565) - 3916339..3917292 (-) 954 WP_152391419.1 DMT family transporter -
  GAY20_RS18570 (GAY20_18570) - 3917365..3918195 (-) 831 WP_058757554.1 AraC family transcriptional regulator -
  GAY20_RS18575 (GAY20_18575) - 3918322..3918849 (+) 528 WP_059009915.1 isochorismatase family protein -
  GAY20_RS18580 (GAY20_18580) - 3918923..3919366 (+) 444 WP_058757556.1 antitoxin Xre/MbcA/ParS toxin-binding domain-containing protein -
  GAY20_RS18585 (GAY20_18585) - 3919363..3919827 (+) 465 WP_152391420.1 RES family NAD+ phosphorylase -
  GAY20_RS18590 (GAY20_18590) - 3920357..3920911 (+) 555 WP_152391421.1 hypothetical protein -
  GAY20_RS18595 (GAY20_18595) ssb 3920973..3921515 (-) 543 WP_021507842.1 single-stranded DNA-binding protein SSB1 Machinery gene
  GAY20_RS18600 (GAY20_18600) uvrA 3921737..3924565 (+) 2829 WP_021507843.1 excinuclease ABC subunit UvrA -
  GAY20_RS18605 (GAY20_18605) - 3924842..3925906 (+) 1065 WP_058757558.1 NAD(P)-dependent alcohol dehydrogenase -
  GAY20_RS18610 (GAY20_18610) - 3925907..3926263 (-) 357 WP_152391422.1 MmcQ/YjbR family DNA-binding protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19303.24 Da        Isoelectric Point: 5.2358

>NTDB_id=392756 GAY20_RS18595 WP_021507842.1 3920973..3921515(-) (ssb) [Pantoea dispersa strain BJQ0007]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGENKEITEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWQDQSGQDKYTTEVVVNVGGTMQMLGGRQQGGNGGGAPMGGQGGGNNNGWGQPQQPQGGGNQFSGGAQQRPQ
QQSAPANNEPPMDFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=392756 GAY20_RS18595 WP_021507842.1 3920973..3921515(-) (ssb) [Pantoea dispersa strain BJQ0007]
ATGGCCAGTCGTGGCGTAAACAAAGTGATTCTTGTCGGGAATCTGGGTCAGGATCCGGAAGTGCGCTACATGCCGAATGG
TGGCGCGGTAGCCAACATTACGCTGGCCACGTCAGAGAGCTGGCGCGACAAGCAAACCGGTGAAAACAAAGAGATCACCG
AATGGCACCGCGTCGTGCTGTTCGGCAAGCTGGCTGAAGTCGCCGGCGAATATCTGCGTAAAGGTTCGCAGGTTTACATT
GAAGGCCAGCTGCGCACCCGTAAATGGCAGGACCAGAGCGGCCAGGACAAATACACCACCGAAGTGGTGGTGAACGTGGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGCAGGGCGGCAACGGCGGTGGCGCACCGATGGGCGGCCAGGGCGGCGGCA
ACAATAACGGCTGGGGCCAGCCGCAGCAGCCACAGGGTGGGGGCAACCAGTTCAGCGGCGGCGCGCAGCAGCGCCCACAG
CAGCAGAGCGCACCGGCGAACAACGAACCACCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.118

100

0.756
  ssb Glaesserella parasuis strain SC1401

58.378

100

0.6
  ssb Neisseria meningitidis MC58

45

100

0.45
  ssb Neisseria gonorrhoeae MS11

45

100

0.45
  ssbA Bacillus subtilis subsp. subtilis str. 168

37.222

100

0.372

Multiple sequence alignment