Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GAY20_RS00545 Genome accession   NZ_CP045216
Coordinates   119010..120530 (-) Length   506 a.a.
NCBI ID   WP_152390323.1    Uniprot ID   -
Organism   Pantoea dispersa strain BJQ0007     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 114010..125530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GAY20_RS00535 (GAY20_00535) hdfR 117700..118521 (-) 822 WP_031279770.1 HTH-type transcriptional regulator HdfR -
  GAY20_RS00540 (GAY20_00540) - 118643..118981 (+) 339 WP_021507919.1 DUF413 domain-containing protein -
  GAY20_RS00545 (GAY20_00545) comM 119010..120530 (-) 1521 WP_152390323.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GAY20_RS00550 (GAY20_00550) ilvL 120859..120957 (+) 99 WP_071813600.1 ilv operon leader peptide -
  GAY20_RS00555 (GAY20_00555) ilvG 121107..122753 (+) 1647 WP_021507917.1 acetolactate synthase 2 catalytic subunit -
  GAY20_RS00560 (GAY20_00560) ilvM 122750..123007 (+) 258 WP_008106624.1 acetolactate synthase 2 small subunit -
  GAY20_RS00565 (GAY20_00565) - 123026..123955 (+) 930 WP_021507916.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54922.13 Da        Isoelectric Point: 7.8772

>NTDB_id=392739 GAY20_RS00545 WP_152390323.1 119010..120530(-) (comM) [Pantoea dispersa strain BJQ0007]
MSLSKVLTRAALGVQAPLVTIEVHISNGLPALTLVGLPETTVKEARERVRSAIINSGFTFPAKRVTINLAPADLPKEGGR
YDLPIAIAILAASEQLPGDKLAHYEFLGELALNGALCGVQAAIPAAMAALQAGRQMVLAEQNQHDVGLIQQGETLVGKHL
VEICAFLHNQTALTVAHYQPETVPHEQQDLSDIIGQQQGRRALEITAAGGHNLLLLGPPGTGKTMLATRLPGIMPPLDDQ
EALECAAIASLVSSGTLHHQWRKRPFRAPHHSASLYALVGGGSLPRPGEISLAHNGVLFLDELPEFERKALDALREPIES
GEIAISRSRAKVTFPARFQLIGAMNPSPTGHYQGNHNRCTPQQVLRYLSRLSGPFLDRFDLSLEIPLLPGGSLSQKQQHS
ETSAQVRARVLAARAIQMARAGKVNAQLSNPEIARDCVLQQQDAEWLEEILNALGLSVRAWQRILKVARTIADLAGERQV
TRQHLQEAVGYRSIDRLLIYLHKSLE

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=392739 GAY20_RS00545 WP_152390323.1 119010..120530(-) (comM) [Pantoea dispersa strain BJQ0007]
ATGTCTTTATCGAAAGTATTAACACGCGCGGCGCTCGGAGTGCAGGCTCCACTGGTGACGATTGAAGTGCATATCAGCAA
CGGTCTGCCAGCATTGACACTGGTTGGTCTGCCGGAAACTACCGTCAAAGAAGCCCGCGAACGCGTGCGCAGCGCCATTA
TCAATAGCGGTTTCACTTTTCCGGCGAAGCGCGTCACCATTAATCTCGCGCCAGCAGATTTACCTAAAGAGGGTGGGCGC
TACGACCTGCCGATCGCTATCGCCATTCTCGCGGCCTCAGAGCAGCTGCCAGGCGATAAGCTGGCCCATTATGAGTTCCT
GGGTGAGCTGGCGCTAAACGGCGCGCTGTGTGGCGTTCAGGCCGCGATTCCTGCTGCCATGGCGGCACTGCAGGCCGGGC
GTCAGATGGTCTTAGCGGAGCAGAATCAACATGATGTCGGCCTGATACAACAGGGTGAAACGCTGGTGGGCAAGCATCTG
GTGGAGATCTGCGCTTTCCTGCATAACCAGACGGCGCTGACGGTCGCCCATTACCAGCCTGAAACGGTGCCGCACGAGCA
ACAGGACCTGAGCGATATTATTGGCCAGCAGCAGGGACGGCGCGCGCTGGAAATCACCGCCGCCGGTGGCCATAACCTGT
TGCTGCTGGGCCCGCCCGGCACCGGTAAGACCATGCTGGCAACCCGATTGCCCGGCATTATGCCGCCGCTGGACGACCAG
GAAGCACTGGAGTGCGCCGCAATTGCCAGCCTGGTCAGCAGCGGTACGCTACATCATCAGTGGCGTAAACGGCCGTTCAG
AGCGCCTCATCACAGCGCATCGTTGTATGCGCTGGTCGGCGGAGGATCACTGCCGCGGCCGGGTGAAATTTCGCTGGCGC
ACAACGGGGTGCTGTTTCTTGATGAACTGCCCGAGTTTGAGCGCAAAGCGCTGGATGCGTTACGCGAACCGATTGAGTCC
GGTGAAATCGCTATTTCCCGTTCCCGCGCCAAAGTCACTTTCCCTGCGCGCTTTCAGCTGATTGGTGCAATGAATCCCAG
CCCGACGGGCCATTATCAGGGGAATCATAATCGCTGCACGCCGCAGCAGGTGCTGCGCTATCTCAGCCGGCTGTCTGGTC
CGTTTCTGGATCGCTTCGACCTGTCGCTGGAGATTCCGCTGCTACCGGGCGGCTCGCTCAGCCAGAAGCAGCAGCACAGC
GAAACCAGCGCGCAGGTGCGCGCACGTGTACTGGCCGCCCGGGCGATACAGATGGCACGCGCGGGCAAAGTGAATGCGCA
GCTGTCGAATCCGGAGATCGCCCGTGATTGTGTGTTACAGCAGCAGGACGCGGAATGGCTGGAGGAGATCCTGAATGCAC
TGGGATTATCGGTGCGTGCGTGGCAGCGCATCTTAAAGGTGGCGAGAACCATCGCAGATTTAGCGGGTGAACGGCAGGTT
ACGCGTCAGCATCTGCAGGAGGCGGTGGGATATCGCAGTATCGATCGTTTACTGATTTACCTGCATAAAAGCCTGGAATG
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-388)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

62.227

99.407

0.619
  comM Glaesserella parasuis strain SC1401

62.028

99.407

0.617
  comM Vibrio cholerae strain A1552

61.355

99.209

0.609
  comM Vibrio campbellii strain DS40M4

60.558

99.209

0.601
  comM Legionella pneumophila str. Paris

48.29

98.221

0.474
  comM Legionella pneumophila strain ERS1305867

48.29

98.221

0.474
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.083

100

0.431

Multiple sequence alignment