Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GBK02_RS02045 Genome accession   NZ_CP045202
Coordinates   423084..424574 (-) Length   496 a.a.
NCBI ID   WP_203468122.1    Uniprot ID   A0A974Y6F2
Organism   Dechloromonas sp. TW-R-39-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 418084..429574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBK02_RS02030 (GBK02_02025) bamE 420937..421431 (-) 495 WP_203468119.1 outer membrane protein assembly factor BamE -
  GBK02_RS02035 (GBK02_02030) - 421520..421912 (+) 393 WP_203468120.1 rhodanese-like domain-containing protein -
  GBK02_RS02040 (GBK02_02035) - 421892..423091 (-) 1200 WP_203468121.1 multidrug effflux MFS transporter -
  GBK02_RS02045 (GBK02_02040) comM 423084..424574 (-) 1491 WP_203468122.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GBK02_RS02050 (GBK02_02045) - 424580..424822 (-) 243 WP_203468123.1 accessory factor UbiK family protein -
  GBK02_RS02055 (GBK02_02050) - 425066..425836 (+) 771 WP_203468124.1 TorF family putative porin -
  GBK02_RS02060 (GBK02_02055) glnK 425922..426260 (+) 339 WP_119489942.1 P-II family nitrogen regulator -
  GBK02_RS02065 (GBK02_02060) - 426271..427758 (+) 1488 WP_203468125.1 ammonium transporter -
  GBK02_RS02070 (GBK02_02065) - 427863..428432 (-) 570 WP_203468126.1 hydrolase -
  GBK02_RS02075 (GBK02_02070) purU 428432..429295 (-) 864 WP_203468127.1 formyltetrahydrofolate deformylase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 52796.46 Da        Isoelectric Point: 8.2161

>NTDB_id=392656 GBK02_RS02045 WP_203468122.1 423084..424574(-) (comM) [Dechloromonas sp. TW-R-39-2]
MALAVAHSRGLDGLNAPPVIVEVHLASGLPSFALVGLPDTEVKEARDRVRAAIVNSGFEFPSKRITVNLAPADLPKESGR
FDLPIALGILAASGQIPARALADYEFAGELSLSGELRPVRGALAMALQTGQGKAFILPESSAHEAALTGSDHIFAARSLL
QVCAHLGGQQALPRAVAVDDRKAPVFPDLNEVRGQTQAKRVLEIAAAGNHSLLMIGPPGSGKSMLAARLPGLMPALDPDA
ARSSAAVLSLTGLFRPENFGVRPYRQPHHTASAVALVGGGNPPRPGEISLAHQGVLFLDELVEFDRKVLETLREPLESGR
VHIARAARHAEFPAEFQLIGAMNPCPCGFHGDSQGKCRCTPDQIARYRGKLSGPFLDRIDLLIEVPALPADTLAEQAAGE
ASATVRARVETAQARQRARQHKPNARLNSAEVDQCCSPDEAGKQLLKQATIRLNLSARAWHRILKVARTIADLAASHDIT
AAHIAEAIQYRRLAHD

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=392656 GBK02_RS02045 WP_203468122.1 423084..424574(-) (comM) [Dechloromonas sp. TW-R-39-2]
ATGGCGCTAGCCGTCGCTCACAGCCGAGGGCTTGACGGTCTCAACGCCCCACCGGTCATCGTCGAGGTTCATCTGGCCAG
TGGCCTGCCCAGTTTTGCATTGGTCGGCCTGCCGGATACCGAAGTCAAGGAAGCGCGCGACCGCGTGCGCGCTGCCATCG
TCAATTCCGGCTTTGAATTCCCGAGCAAGCGCATCACGGTCAACCTTGCCCCGGCCGATTTACCAAAAGAGTCGGGCCGT
TTCGATCTGCCAATCGCTCTCGGCATCCTTGCTGCCAGCGGCCAGATTCCGGCCCGCGCACTGGCTGATTACGAATTTGC
CGGCGAGTTGTCTCTTTCCGGGGAATTACGTCCGGTTCGCGGCGCACTGGCCATGGCACTCCAGACAGGCCAGGGCAAGG
CCTTCATCCTGCCCGAAAGCAGCGCTCACGAAGCCGCCCTGACCGGGAGCGATCATATTTTTGCCGCCCGCTCCCTGCTT
CAAGTCTGCGCACATCTGGGCGGCCAGCAGGCTTTACCCCGAGCTGTCGCGGTCGACGACAGAAAAGCGCCGGTTTTCCC
CGACTTGAATGAAGTGCGCGGTCAGACACAAGCCAAACGTGTGCTGGAAATCGCTGCCGCTGGAAATCACTCGCTGCTGA
TGATCGGTCCGCCTGGCTCAGGAAAGTCGATGCTGGCGGCCCGCCTGCCCGGCCTGATGCCAGCCCTCGATCCCGATGCG
GCACGCAGTTCGGCGGCCGTGCTGTCCCTCACCGGCCTGTTCCGACCGGAAAACTTCGGCGTCCGACCCTATCGCCAGCC
TCATCACACAGCATCTGCCGTCGCGCTGGTTGGCGGCGGCAATCCGCCCCGCCCAGGCGAAATCAGCCTGGCACATCAGG
GCGTGCTTTTTCTCGATGAACTGGTCGAATTTGATCGCAAGGTCCTTGAAACCCTGCGCGAACCGCTGGAGTCCGGCCGT
GTGCACATTGCCCGTGCCGCCCGGCATGCTGAATTTCCTGCCGAGTTTCAGCTGATTGGGGCGATGAATCCGTGCCCATG
CGGCTTTCACGGTGACAGCCAGGGAAAATGCCGGTGCACTCCCGACCAGATCGCCCGTTACCGCGGCAAGCTTTCCGGCC
CGTTTCTTGACCGCATCGATCTGCTTATTGAAGTTCCCGCCCTGCCAGCCGACACGCTGGCCGAACAAGCCGCAGGAGAA
GCATCGGCGACGGTTCGGGCACGCGTCGAAACAGCGCAGGCCCGACAACGGGCTCGCCAGCACAAACCAAATGCCCGCCT
GAATTCAGCTGAAGTCGATCAGTGCTGCAGTCCCGATGAAGCCGGAAAACAGCTGCTTAAACAAGCCACTATACGGCTCA
ATCTGTCAGCCCGCGCCTGGCACCGCATTCTCAAGGTTGCACGCACCATCGCCGATCTGGCCGCCAGCCACGACATCACC
GCCGCGCATATTGCCGAAGCCATCCAGTACCGCCGCCTTGCCCATGACTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(399-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.2

100

0.556
  comM Vibrio campbellii strain DS40M4

53.737

99.798

0.536
  comM Haemophilus influenzae Rd KW20

50.902

100

0.512
  comM Glaesserella parasuis strain SC1401

50.501

100

0.508
  comM Legionella pneumophila str. Paris

49.801

100

0.504
  comM Legionella pneumophila strain ERS1305867

49.801

100

0.504
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.379

100

0.454

Multiple sequence alignment