Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   GA693_RS10740 Genome accession   NZ_CP045198
Coordinates   2165816..2166874 (-) Length   352 a.a.
NCBI ID   WP_104505685.1    Uniprot ID   -
Organism   Acinetobacter indicus strain TQ23     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2160816..2171874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GA693_RS10715 aroK 2161280..2161822 (-) 543 WP_075167858.1 shikimate kinase AroK -
  GA693_RS10720 pilQ 2161859..2163922 (-) 2064 WP_160240901.1 type IV pilus secretin PilQ Machinery gene
  GA693_RS10725 pilP 2163938..2164465 (-) 528 WP_104489345.1 pilus assembly protein PilP Machinery gene
  GA693_RS10730 pilO 2164465..2165184 (-) 720 WP_005180513.1 type 4a pilus biogenesis protein PilO Machinery gene
  GA693_RS10735 pilN 2165181..2165816 (-) 636 WP_005180516.1 PilN domain-containing protein Machinery gene
  GA693_RS10740 pilM 2165816..2166874 (-) 1059 WP_104505685.1 pilus assembly protein PilM Machinery gene
  GA693_RS10745 ponA 2167046..2169622 (+) 2577 WP_160240900.1 penicillin-binding protein PBP1a -
  GA693_RS10750 - 2169664..2170467 (-) 804 WP_160240899.1 putative RNA methyltransferase -
  GA693_RS10755 mraY 2170533..2171651 (-) 1119 WP_160240898.1 phospho-N-acetylmuramoyl-pentapeptide- transferase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38981.65 Da        Isoelectric Point: 4.5587

>NTDB_id=392620 GA693_RS10740 WP_104505685.1 2165816..2166874(-) (pilM) [Acinetobacter indicus strain TQ23]
MRRLYRKPSKGLIGVDISSTSVKLLELSVKNDRYWVESYALVPLPEGSVVEKNILNPEAVGDALERAFNLANTPTTAAAL
AIPTSMVISKTIEMDADMTDDEREVQIRMDAEQYIPFPLDEVSLDFEVLPDRLANPNRVNVLLVATRLENVESRCEAIEL
AGLTPKVADVESFAIENAFKVFADTLPMGVNTIGVLDIGHTMTTLSVLKDNKIIYTREQVFGGKQLTQEIQNRYGLSFEE
AGRAKKSRTLPDDYDIEVLEPFLEAVVQQAARSLQFFFSSSQFNEIDHILLAGGNANIPGLAKLLQQKLGYRVTIANPFL
QMGFSSKIDIKRIESDASSLMVACGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=392620 GA693_RS10740 WP_104505685.1 2165816..2166874(-) (pilM) [Acinetobacter indicus strain TQ23]
GTGCGCAGGTTATATCGTAAACCGAGTAAGGGGTTAATAGGTGTAGATATTAGTTCTACTTCTGTTAAGTTATTGGAGCT
CTCTGTAAAGAATGATCGTTACTGGGTGGAAAGTTACGCCTTGGTACCGCTCCCAGAGGGCAGTGTGGTTGAGAAAAATA
TTCTGAATCCTGAAGCTGTAGGGGATGCGCTCGAGCGTGCCTTTAATTTGGCCAATACACCGACAACAGCTGCCGCTTTA
GCGATTCCAACCTCAATGGTAATTAGCAAGACCATTGAGATGGATGCCGATATGACGGATGACGAACGTGAAGTTCAAAT
CCGGATGGATGCAGAGCAATATATTCCTTTCCCATTAGATGAAGTTAGCCTGGACTTTGAGGTGCTGCCTGATCGTCTGG
CCAATCCAAACCGGGTCAATGTTTTGCTGGTGGCGACACGACTGGAAAATGTCGAGAGTCGCTGTGAAGCGATTGAACTG
GCCGGTTTAACCCCAAAAGTGGCAGATGTCGAAAGCTTTGCCATTGAAAATGCCTTTAAAGTCTTCGCCGATACCTTGCC
GATGGGGGTAAATACCATTGGTGTGTTAGACATTGGTCATACTATGACCACGCTGTCGGTACTCAAAGACAATAAAATTA
TCTATACCCGCGAGCAGGTCTTTGGTGGCAAGCAGCTGACCCAGGAAATCCAGAACCGTTATGGTCTGTCCTTTGAAGAA
GCCGGCCGCGCCAAGAAAAGCCGTACCTTGCCAGATGATTATGATATTGAAGTGTTGGAGCCATTCCTTGAGGCGGTGGT
GCAGCAGGCGGCACGTTCGCTGCAGTTCTTCTTCTCCTCATCGCAGTTTAATGAAATTGACCATATTCTGCTGGCCGGTG
GGAATGCCAATATTCCAGGCCTGGCCAAGCTACTACAGCAAAAACTGGGTTACCGCGTCACCATTGCCAATCCGTTTTTA
CAGATGGGTTTCTCCTCCAAAATTGATATTAAAAGAATTGAAAGCGATGCCTCTTCATTGATGGTGGCATGTGGCTTGGC
ATTGAGGAGTTTTGATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

84.659

100

0.847
  comM Acinetobacter nosocomialis M2

84.659

100

0.847
  comM Acinetobacter baylyi ADP1

78.693

100

0.787
  pilM Legionella pneumophila strain ERS1305867

41.243

100

0.415

Multiple sequence alignment