Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   GA693_RS10725 Genome accession   NZ_CP045198
Coordinates   2163938..2164465 (-) Length   175 a.a.
NCBI ID   WP_104489345.1    Uniprot ID   -
Organism   Acinetobacter indicus strain TQ23     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2158938..2169465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GA693_RS10705 - 2159326..2160162 (-) 837 WP_160240902.1 hypothetical protein -
  GA693_RS10710 aroB 2160175..2161257 (-) 1083 WP_016658450.1 3-dehydroquinate synthase -
  GA693_RS10715 aroK 2161280..2161822 (-) 543 WP_075167858.1 shikimate kinase AroK -
  GA693_RS10720 pilQ 2161859..2163922 (-) 2064 WP_160240901.1 type IV pilus secretin PilQ Machinery gene
  GA693_RS10725 pilP 2163938..2164465 (-) 528 WP_104489345.1 pilus assembly protein PilP Machinery gene
  GA693_RS10730 pilO 2164465..2165184 (-) 720 WP_005180513.1 type 4a pilus biogenesis protein PilO Machinery gene
  GA693_RS10735 pilN 2165181..2165816 (-) 636 WP_005180516.1 PilN domain-containing protein Machinery gene
  GA693_RS10740 pilM 2165816..2166874 (-) 1059 WP_104505685.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19272.46 Da        Isoelectric Point: 7.1666

>NTDB_id=392617 GA693_RS10725 WP_104489345.1 2163938..2164465(-) (pilP) [Acinetobacter indicus strain TQ23]
MKFEKLSLVLVLGLLAAGCDSRIDAVNTQMAEIRNQPPLPIEPAPTFEPAPVFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNLSRQLQPLESYALETLSMKGSMRGQRGEILALIQTPDGEIERIQRGSYMGLNHGRVINITPTQIDLIEIIPDGREG
YVERPRSLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=392617 GA693_RS10725 WP_104489345.1 2163938..2164465(-) (pilP) [Acinetobacter indicus strain TQ23]
ATGAAATTTGAAAAACTTTCGTTGGTTCTGGTGTTGGGCCTACTGGCTGCAGGCTGTGATTCACGTATTGATGCCGTGAA
TACACAAATGGCAGAAATCCGTAATCAGCCGCCGTTACCGATTGAACCGGCACCGACTTTTGAGCCGGCACCTGTATTTA
ACTATGCAGCACATCAGCTGAAAAGCCCGTTTATGCCAAGTTCTCTGGCGGCCGAGCTGAAAATTATGGCGGGTAAACGG
GTTTATCCAAACCTGTCGCGCCAGTTGCAGCCTTTAGAAAGCTATGCACTGGAAACCTTAAGCATGAAAGGTAGCATGCG
CGGGCAACGCGGCGAGATTCTGGCCCTGATTCAAACTCCAGATGGGGAAATTGAACGGATTCAGCGCGGCAGCTATATGG
GCTTGAATCATGGTCGGGTCATCAATATCACACCGACACAAATTGACTTAATTGAGATTATTCCAGATGGTCGCGAAGGG
TATGTTGAACGTCCAAGAAGTCTAGTACTGATTGGGCCGGCGCCATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(28-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

75.429

100

0.754
  comL Acinetobacter baylyi ADP1

71.856

95.429

0.686

Multiple sequence alignment