Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   D1010_RS07215 Genome accession   NZ_CP045143
Coordinates   1382463..1382909 (+) Length   148 a.a.
NCBI ID   WP_152260606.1    Uniprot ID   A0A5P8M3Z2
Organism   Schleiferilactobacillus harbinensis strain M1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1377463..1387909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1010_RS07180 (D1010_07180) - 1377647..1378339 (+) 693 WP_152260600.1 ERF family protein -
  D1010_RS07185 (D1010_07185) - 1378320..1379018 (+) 699 WP_226911086.1 putative HNHc nuclease -
  D1010_RS07190 (D1010_07190) - 1379011..1379865 (+) 855 WP_152260601.1 hypothetical protein -
  D1010_RS07195 (D1010_07195) - 1379852..1381132 (+) 1281 WP_152260602.1 DnaB-like helicase C-terminal domain-containing protein -
  D1010_RS07200 (D1010_07200) - 1381129..1381539 (+) 411 WP_152260603.1 hypothetical protein -
  D1010_RS07205 (D1010_07205) - 1381526..1382044 (+) 519 WP_152260604.1 hypothetical protein -
  D1010_RS07210 (D1010_07210) - 1382041..1382466 (+) 426 WP_152260605.1 RusA family crossover junction endodeoxyribonuclease -
  D1010_RS07215 (D1010_07215) ssb 1382463..1382909 (+) 447 WP_152260606.1 single-stranded DNA-binding protein Machinery gene
  D1010_RS07220 (D1010_07220) - 1383084..1383455 (+) 372 WP_152260607.1 hypothetical protein -
  D1010_RS18115 - 1383452..1383610 (+) 159 WP_193312191.1 hypothetical protein -
  D1010_RS07225 (D1010_07225) - 1383692..1383997 (+) 306 WP_152260608.1 hypothetical protein -
  D1010_RS07230 (D1010_07230) - 1384173..1384577 (+) 405 WP_152260609.1 hypothetical protein -
  D1010_RS07235 (D1010_07235) - 1384729..1384974 (+) 246 WP_152260610.1 hypothetical protein -
  D1010_RS07240 (D1010_07240) - 1384971..1385336 (+) 366 WP_152260611.1 YopX family protein -
  D1010_RS07245 (D1010_07245) - 1385329..1385637 (+) 309 WP_152260612.1 hypothetical protein -
  D1010_RS07250 (D1010_07250) - 1385621..1386076 (+) 456 WP_193312037.1 hypothetical protein -
  D1010_RS18690 - 1386475..1386597 (+) 123 WP_264371641.1 hypothetical protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16035.66 Da        Isoelectric Point: 6.7198

>NTDB_id=392310 D1010_RS07215 WP_152260606.1 1382463..1382909(+) (ssb) [Schleiferilactobacillus harbinensis strain M1]
MINRVVLVGHLTRDVDLRYTQGGTAVGRFTVAVTRNFKNSQGERDSDFINCTMWRKAAESFASFAHKGTLVGIDGRIQTG
SYTNKDGAKVYTTEVVVDEFSLLSPKNKQESAPSQGGGQSSRSDGKHQQPADSGFDSGTPISDDDLPF

Nucleotide


Download         Length: 447 bp        

>NTDB_id=392310 D1010_RS07215 WP_152260606.1 1382463..1382909(+) (ssb) [Schleiferilactobacillus harbinensis strain M1]
ATGATTAATCGAGTGGTGTTAGTGGGCCACCTGACCCGAGACGTTGATCTTCGGTACACGCAAGGCGGGACGGCTGTTGG
CCGATTTACCGTGGCGGTGACACGGAACTTCAAGAACTCACAGGGTGAGCGGGACAGCGATTTTATCAATTGCACGATGT
GGCGTAAGGCGGCGGAGAGTTTCGCGAGCTTTGCCCACAAAGGCACATTGGTCGGCATTGATGGCCGCATCCAGACTGGC
AGCTACACCAACAAGGATGGCGCCAAGGTATACACGACCGAGGTAGTGGTTGACGAGTTTTCGCTGCTGAGCCCCAAAAA
CAAGCAGGAGAGCGCGCCCAGTCAAGGCGGCGGCCAATCATCCCGGTCGGATGGAAAACATCAGCAGCCGGCCGATAGTG
GATTTGACAGTGGCACACCAATCAGCGACGATGACTTACCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P8M3Z2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

50.575

100

0.595
  ssbA Bacillus subtilis subsp. subtilis str. 168

43.605

100

0.507
  ssbB Bacillus subtilis subsp. subtilis str. 168

52.679

75.676

0.399
  ssb Neisseria gonorrhoeae MS11

32.558

100

0.378

Multiple sequence alignment