Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   GB851_RS09860 Genome accession   NZ_CP045141
Coordinates   1894944..1896131 (+) Length   395 a.a.
NCBI ID   WP_038310381.1    Uniprot ID   -
Organism   Kingella kingae strain F41215CHC     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1889944..1901131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GB851_RS09840 (GB851_10035) gap 1890632..1891636 (+) 1005 WP_003792059.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  GB851_RS09845 (GB851_10040) mnmE 1891985..1893364 (-) 1380 WP_038310383.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE -
  GB851_RS09850 (GB851_10045) - 1893475..1894032 (+) 558 WP_003788155.1 porin family protein -
  GB851_RS09855 (GB851_10050) tsaA 1894112..1894798 (+) 687 WP_003792055.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -
  GB851_RS09860 (GB851_10055) dprA 1894944..1896131 (+) 1188 WP_038310381.1 DNA-processing protein DprA Machinery gene
  GB851_RS09865 (GB851_10060) xseB 1896472..1896699 (+) 228 WP_003788162.1 exodeoxyribonuclease VII small subunit -
  GB851_RS09870 (GB851_10065) - 1896692..1897579 (+) 888 WP_003792050.1 polyprenyl synthetase family protein -
  GB851_RS09875 (GB851_10070) rplU 1897682..1897987 (+) 306 WP_003792048.1 50S ribosomal protein L21 -
  GB851_RS09880 (GB851_10075) rpmA 1898013..1898285 (+) 273 WP_003788168.1 50S ribosomal protein L27 -
  GB851_RS09885 (GB851_10080) - 1898404..1899378 (+) 975 WP_003792047.1 polyprenyl synthetase family protein -
  GB851_RS09895 (GB851_10090) - 1899539..1900957 (-) 1419 WP_038319791.1 sodium:alanine symporter family protein -

Sequence

Protein


Download         Length: 395 a.a.        Molecular weight: 42425.82 Da        Isoelectric Point: 5.3009

>NTDB_id=392294 GB851_RS09860 WP_038310381.1 1894944..1896131(+) (dprA) [Kingella kingae strain F41215CHC]
MVTESERCAWIELALTPYIGAESFLRLIEHCGSAAEALRAPVNLVAQLAHHGKQAAAAWTDKSKAKSACEAALQWEQQEN
CRLLLLCDDDYPQLLTEGLTPPPLLFVRGQMACLQRPAIGIVGGRRATPQAVRMAGDFGKALSEKGIAVISGMATGIDAA
AHEGALQGSSSTIAVWGTGIDRIYPQSNQKLAYQIAERGAIISEFPLGTRPVAGNFPRRNRIIAALSWATLVVEATVESG
SLITARLAAEMGREVMAIPSSIDNLLAKGCHKLIKEGAKLVECVDDIVQECPLLLGESVQAALDLPTTLSTRKKREKTAK
PIAQISEVNEPETPISLHENSDNVLLNAMGFSPIHPDLLAENLNLPAVDVYAELTELELDGWIVSMAGGRFQRVK

Nucleotide


Download         Length: 1188 bp        

>NTDB_id=392294 GB851_RS09860 WP_038310381.1 1894944..1896131(+) (dprA) [Kingella kingae strain F41215CHC]
ATGGTTACAGAATCAGAACGCTGTGCATGGATAGAATTGGCTCTAACCCCTTATATTGGCGCGGAAAGTTTTTTGCGCTT
GATTGAGCATTGCGGTTCGGCAGCCGAAGCCTTGCGTGCGCCAGTCAATTTGGTGGCGCAGTTGGCACATCATGGCAAAC
AAGCTGCCGCCGCGTGGACAGACAAAAGTAAGGCAAAAAGTGCGTGTGAAGCGGCTTTGCAATGGGAGCAACAGGAAAAT
TGTAGGCTGCTTTTGTTGTGCGATGACGATTATCCACAGCTCTTAACCGAAGGTTTAACGCCACCTCCATTGCTGTTTGT
GCGTGGACAAATGGCGTGTTTACAGCGCCCTGCAATCGGCATTGTTGGCGGCAGACGCGCCACGCCACAAGCGGTACGAA
TGGCTGGCGATTTTGGTAAAGCATTGAGTGAAAAAGGCATTGCGGTTATTTCGGGCATGGCAACAGGCATTGACGCGGCA
GCACACGAAGGCGCGTTGCAAGGATCGAGCAGCACGATTGCGGTGTGGGGAACGGGCATTGACCGAATTTATCCACAGAG
CAACCAAAAATTAGCATATCAAATTGCCGAACGTGGCGCGATTATTTCCGAATTTCCATTGGGAACGCGCCCTGTTGCAG
GCAATTTTCCGCGCCGAAATCGGATTATTGCGGCGTTGAGTTGGGCGACTTTGGTGGTGGAAGCGACGGTGGAAAGTGGC
TCGCTCATCACAGCGCGATTGGCGGCGGAAATGGGGCGCGAAGTCATGGCGATTCCCAGTTCTATTGACAATCTGCTTGC
CAAAGGTTGCCATAAACTCATCAAAGAAGGCGCGAAATTAGTGGAATGCGTGGACGATATTGTGCAGGAATGTCCGCTGT
TGTTGGGCGAATCGGTGCAGGCTGCTTTGGATTTACCCACAACTTTATCCACAAGAAAGAAACGCGAAAAAACAGCGAAA
CCAATCGCCCAAATAAGCGAAGTAAACGAACCCGAAACGCCAATCAGCCTGCACGAAAACAGCGATAATGTGTTGCTCAA
TGCGATGGGATTTTCGCCTATCCACCCTGATTTATTGGCAGAAAATTTAAATTTGCCTGCTGTGGACGTGTATGCCGAGC
TAACCGAGTTGGAATTGGACGGCTGGATTGTGTCTATGGCTGGCGGACGTTTTCAGCGTGTGAAGTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-282)

DprA winged helix domain (DprA_WH)

(342-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria meningitidis strain C311

57.644

100

0.582
  dprA Neisseria meningitidis MC58

57.644

100

0.582
  dprA Neisseria gonorrhoeae MS11

55.86

100

0.567
  dprA Neisseria gonorrhoeae strain FA1090

55.362

100

0.562
  dprA Vibrio campbellii strain DS40M4

36.896

99.494

0.367
  dprA Vibrio cholerae strain A1552

36.181

100

0.365

Multiple sequence alignment