Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GB851_RS08395 Genome accession   NZ_CP045141
Coordinates   1619560..1621062 (+) Length   500 a.a.
NCBI ID   WP_164538308.1    Uniprot ID   -
Organism   Kingella kingae strain F41215CHC     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1614560..1626062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GB851_RS10835 - 1615735..1615893 (-) 159 Protein_1651 IS5/IS1182 family transposase -
  GB851_RS08375 (GB851_08560) - 1616149..1616892 (-) 744 WP_003791395.1 IS110 family transposase -
  GB851_RS08380 (GB851_08565) - 1617287..1618120 (+) 834 Protein_1653 adenosine deaminase family protein -
  GB851_RS10935 - 1618200..1618328 (+) 129 WP_003785152.1 hypothetical protein -
  GB851_RS08385 (GB851_08570) - 1618394..1618972 (-) 579 WP_003785150.1 biliverdin-producing heme oxygenase -
  GB851_RS08390 (GB851_08575) - 1619271..1619549 (+) 279 WP_003791402.1 accessory factor UbiK family protein -
  GB851_RS08395 (GB851_08580) comM 1619560..1621062 (+) 1503 WP_164538308.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GB851_RS08400 (GB851_08585) - 1621177..1621647 (+) 471 WP_003791406.1 hypothetical protein -
  GB851_RS08405 - 1621709..1621882 (+) 174 WP_003785141.1 hypothetical protein -
  GB851_RS08410 (GB851_08590) - 1621916..1622248 (+) 333 WP_003785140.1 zinc ribbon domain-containing protein YjdM -
  GB851_RS08415 (GB851_08595) murU 1622263..1622964 (+) 702 WP_003785138.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  GB851_RS08420 (GB851_08600) - 1623038..1624138 (-) 1101 WP_038310550.1 hypothetical protein -
  GB851_RS08425 (GB851_08605) - 1624135..1624818 (-) 684 WP_164538309.1 hypothetical protein -
  GB851_RS08430 (GB851_08610) aphA 1624922..1625653 (-) 732 WP_003791412.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 54028.82 Da        Isoelectric Point: 7.5340

>NTDB_id=392291 GB851_RS08395 WP_164538308.1 1619560..1621062(+) (comM) [Kingella kingae strain F41215CHC]
MTFAVVNSRALNGMNAPLVEVEVHLANGLPQCNIVGLPDTEVKESRDRVRAAILQSGFEFPMQKITVNLAPADLPKESGR
FDLPIAIGILAASGQIIANDLERYEFAGELALSGNLRPIRGALAMAWQGQKAGRAFVLPSDNAIQAASMGQITAYGANSL
LEVAAHLNGTQSLAPSRLPDVPKQPAPDSLPDLRDVKGQHTARLALEIAAAGGHSLLMMGPPGTGKSMLAQRLPSILPPL
TDDELTSVWALRSLLPQFTDSLQHDKRRPFRAPHHSASSAALVGGGSDPKPGEISLAHQGVLFLDELPEFDRRVLEMLRE
PLESGEIHISRATRQATYPAKFQLVAAMNPCPCGYLGHPSKPCRCTPDSVKRYRDRISGPLLDRIDLTIEVPTLSAAELV
SAQQGEDSATVLQRVLAARERQYARQGKINAALSSSELDQVAQIQSEAREALGQILEKLSLSARSFHRILRVARTLADLA
QDDEVNRAHIIRAVSFRRAV

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=392291 GB851_RS08395 WP_164538308.1 1619560..1621062(+) (comM) [Kingella kingae strain F41215CHC]
ATGACGTTTGCGGTGGTCAATAGTCGTGCGCTCAATGGTATGAACGCGCCTTTGGTGGAAGTGGAAGTGCATTTGGCAAA
CGGTTTGCCGCAATGCAACATTGTGGGTTTGCCCGACACCGAAGTCAAAGAAAGTCGCGACCGCGTGCGTGCGGCAATTT
TGCAAAGTGGCTTTGAGTTCCCCATGCAAAAAATCACGGTCAATCTTGCGCCTGCGGATTTGCCCAAGGAATCGGGGCGA
TTTGATTTGCCGATTGCAATTGGTATTTTGGCAGCCAGTGGGCAAATTATCGCCAACGATTTGGAGCGATACGAATTTGC
TGGCGAATTAGCGTTGTCGGGCAACTTGCGTCCGATTCGCGGTGCGTTGGCAATGGCGTGGCAGGGTCAGAAAGCAGGCA
GAGCGTTTGTGTTGCCCAGCGACAATGCGATTCAAGCCGCCAGCATGGGGCAAATCACGGCATACGGCGCGAACAGTTTG
TTGGAAGTGGCGGCGCATTTAAACGGCACACAAAGCCTTGCGCCCAGCCGTTTGCCCGATGTACCAAAGCAGCCTGCACC
CGATTCTTTGCCCGATTTGCGCGATGTGAAAGGACAGCACACGGCGCGATTGGCATTGGAAATTGCTGCAGCAGGCGGAC
ACAGTTTGTTGATGATGGGGCCACCAGGCACCGGCAAATCCATGCTCGCGCAACGTTTGCCGTCTATTTTGCCGCCTTTG
ACCGATGATGAATTGACCAGCGTCTGGGCGTTGCGCTCGCTGTTGCCGCAGTTCACAGACAGCCTGCAACACGATAAACG
CCGACCGTTTCGTGCGCCACATCATTCGGCAAGTTCTGCTGCGTTGGTGGGTGGCGGTTCAGACCCGAAGCCCGGCGAAA
TTTCGTTGGCGCATCAAGGCGTGTTGTTTTTAGACGAATTGCCCGAATTTGACCGCCGTGTGTTGGAAATGTTGCGCGAA
CCGTTGGAAAGCGGCGAAATTCATATTTCTCGGGCGACGCGGCAGGCGACTTATCCAGCCAAATTTCAATTAGTGGCGGC
GATGAATCCTTGTCCGTGCGGCTATTTGGGACACCCAAGCAAACCGTGTCGCTGCACGCCCGATAGCGTCAAACGATACC
GTGACCGTATTTCGGGCCCGCTGCTTGACCGCATTGATTTGACGATTGAAGTACCCACCCTATCGGCAGCGGAACTGGTT
AGCGCACAACAAGGCGAAGACAGCGCAACCGTGTTACAGCGCGTGTTAGCAGCGCGAGAACGCCAATATGCGCGACAAGG
CAAAATCAACGCAGCATTGTCGTCCAGCGAATTAGACCAAGTGGCGCAAATTCAATCCGAAGCGCGTGAAGCGTTGGGGC
AGATTTTGGAAAAATTGTCGCTGTCGGCGCGCAGTTTTCATCGCATTTTGCGTGTGGCACGAACGTTGGCGGATTTGGCG
CAAGACGATGAAGTTAATCGGGCGCACATTATTCGAGCAGTAAGTTTTCGCCGTGCTGTGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.507

99.8

0.534
  comM Vibrio campbellii strain DS40M4

51.703

99.8

0.516
  comM Haemophilus influenzae Rd KW20

49.901

100

0.504
  comM Glaesserella parasuis strain SC1401

49.6

100

0.496
  comM Legionella pneumophila str. Paris

47.714

100

0.48
  comM Legionella pneumophila strain ERS1305867

47.714

100

0.48
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44

100

0.44

Multiple sequence alignment