Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GA636_RS01985 Genome accession   NZ_CP045135
Coordinates   407402..408889 (+) Length   495 a.a.
NCBI ID   WP_160232128.1    Uniprot ID   -
Organism   Acinetobacter indicus strain XG01     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 402402..413889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GA636_RS01960 ribD 403314..404402 (-) 1089 WP_104470531.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  GA636_RS01965 nrdR 404426..404884 (-) 459 WP_005181550.1 transcriptional regulator NrdR -
  GA636_RS01970 - 405024..406427 (-) 1404 WP_104470532.1 ammonium transporter -
  GA636_RS01975 glnK 406490..406828 (-) 339 WP_004650081.1 P-II family nitrogen regulator -
  GA636_RS01980 - 407105..407332 (+) 228 WP_005181545.1 accessory factor UbiK family protein -
  GA636_RS01985 comM 407402..408889 (+) 1488 WP_160232128.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GA636_RS01990 - 408948..409682 (-) 735 WP_075174922.1 TorF family putative porin -
  GA636_RS01995 - 410442..411770 (+) 1329 WP_104498464.1 OprD family outer membrane porin -
  GA636_RS02000 ppa 411877..412401 (-) 525 WP_005181532.1 inorganic diphosphatase -
  GA636_RS02005 - 412519..412920 (-) 402 WP_005181530.1 MAPEG family protein -
  GA636_RS02010 - 413024..413410 (+) 387 WP_045795369.1 hypothetical protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54136.15 Da        Isoelectric Point: 7.3353

>NTDB_id=392209 GA636_RS01985 WP_160232128.1 407402..408889(+) (comM) [Acinetobacter indicus strain XG01]
MSFAKIYTRGLLGLNAPSIEVEVHLSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPEQAAENLEFIGELALDGQLRPVTGTLSIAIACQAAGHQLVLPEPNAQEAAQLPDFQVFAASHL
KQVCEHLAQAAPLQPFAASSETRLERYAFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLASILPPLNM
QENLEVASIYSIANTPHRFGQRPFRAPHHTASAIALVGGGSHPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQITFPASFQLIAAMNPCPCGYAFNQDIRCQCSSEMIKRYQNRISGPLLDRIDLHIDVPPLQAHELQSTQPVE
DSATVRERVITAYELQMQRQNKLNMALNPKELEQFAPLNAQTSKMFELAQQKLNLSARAYHRVLRIARSIADLAENSEIQ
PQHLSEALSYRGQQS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=392209 GA636_RS01985 WP_160232128.1 407402..408889(+) (comM) [Acinetobacter indicus strain XG01]
ATGTCTTTTGCCAAAATTTATACGCGGGGTCTGCTTGGACTGAATGCCCCGTCCATTGAAGTTGAAGTCCATTTAAGTCA
GGGTCTGCCCTCCTTAACCATTGTCGGTCTGGCCGAAGCCGCGGTCCGTGAAAGTAAAGACCGGGTTCGCTCGGCCATTA
TTAACAGTGGTTTTCAGTTTCCCACCAAACGTTTGACCATTAATCTGGCCCCGGCCGATTTACCCAAAGATGGCTCACGT
CTGGATTTACCGATTGCCTTAGGCATTCTGATTGCTTCCGGACAATTGCCCGAACAGGCCGCAGAAAACCTGGAATTTAT
TGGTGAACTGGCGCTGGATGGCCAGTTACGCCCGGTCACCGGGACTTTAAGTATTGCCATTGCCTGTCAGGCGGCCGGCC
ATCAACTGGTATTACCGGAACCCAATGCACAGGAAGCCGCACAATTGCCCGACTTTCAGGTGTTTGCGGCCAGTCATCTG
AAACAGGTCTGTGAGCATCTGGCGCAGGCTGCGCCCCTACAGCCTTTTGCAGCAAGCTCGGAAACCCGCTTGGAACGCTA
TGCTTTTGACCTGGCGGATGTCAAAGGACAGCTGCGACCTCGGCGTGCCCTGGAAATTGCCGCTGCCGGTGGCCATTCCT
TGCTCTTTAAAGGTCCACCCGGTACAGGCAAGACTCTCTTGGCCTCACGTCTGGCCAGTATTTTGCCGCCCCTGAATATG
CAGGAAAATCTTGAAGTTGCCAGTATTTATTCAATTGCCAATACCCCGCATCGCTTTGGACAGCGGCCATTTCGCGCCCC
GCATCATACCGCTTCAGCGATTGCGCTGGTCGGTGGTGGCTCACATCCAAAACCGGGCGAAATTACCCTGGCCCATTTAG
GTGTGCTGTTTTTAGATGAACTGCCGGAGTTTGACCGTAAAGTGCTGGAAGTATTGCGGCAGCCCTTGGAATCCAAGGAA
ATTGTAATTTCCCGGGCATCGCGGCAGATTACCTTTCCGGCCAGTTTCCAGCTGATTGCCGCGATGAACCCCTGCCCGTG
TGGCTATGCGTTTAATCAGGATATTCGCTGCCAGTGTTCTTCGGAAATGATCAAGCGTTATCAGAACCGGATTTCTGGGC
CATTACTGGATCGGATTGACCTGCATATCGATGTGCCTCCTCTGCAAGCTCATGAATTACAATCTACACAACCGGTAGAA
GATTCTGCAACCGTTAGGGAGCGTGTGATAACTGCCTACGAACTGCAAATGCAAAGACAGAACAAGCTGAATATGGCATT
AAACCCAAAAGAATTAGAGCAATTTGCGCCACTAAATGCTCAGACCAGTAAAATGTTTGAACTTGCCCAACAAAAGTTAA
ATTTATCTGCCCGTGCTTATCATCGGGTATTACGAATAGCACGAAGCATAGCTGATTTAGCTGAGAATTCAGAAATTCAG
CCTCAGCATTTATCGGAAGCTTTATCTTATCGAGGTCAGCAAAGCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

51.4

100

0.519
  comM Glaesserella parasuis strain SC1401

50.701

100

0.511
  comM Vibrio cholerae strain A1552

50.707

100

0.507
  comM Legionella pneumophila str. Paris

50.403

100

0.505
  comM Legionella pneumophila strain ERS1305867

50.403

100

0.505
  comM Vibrio campbellii strain DS40M4

50.303

100

0.503
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.941

100

0.469

Multiple sequence alignment