Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   GA721_RS13355 Genome accession   NZ_CP045131
Coordinates   2822912..2824054 (+) Length   380 a.a.
NCBI ID   WP_160243624.1    Uniprot ID   -
Organism   Acinetobacter indicus strain TQ18     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 2817912..2829054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GA721_RS13335 - 2818456..2820507 (-) 2052 WP_160243623.1 TonB-dependent copper receptor -
  GA721_RS13340 - 2820581..2821003 (-) 423 WP_016658991.1 DUF2946 family protein -
  GA721_RS13345 def 2821094..2821618 (-) 525 WP_005181462.1 peptide deformylase -
  GA721_RS13350 tsaP 2821738..2822895 (+) 1158 WP_016658990.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  GA721_RS13355 dprA 2822912..2824054 (+) 1143 WP_160243624.1 DNA-processing protein DprA Machinery gene
  GA721_RS13360 - 2824099..2824665 (+) 567 WP_005181449.1 L-threonylcarbamoyladenylate synthase -
  GA721_RS15055 - 2824823..2824975 (+) 153 WP_228152267.1 hypothetical protein -
  GA721_RS13370 - 2825046..2825957 (-) 912 WP_005181447.1 DMT family transporter -
  GA721_RS13375 - 2826286..2826828 (+) 543 WP_005181445.1 glutathione peroxidase -
  GA721_RS13380 - 2827011..2827619 (+) 609 WP_005181443.1 hypothetical protein -
  GA721_RS13385 - 2827741..2828739 (+) 999 WP_160243625.1 pirin family protein -

Sequence


Protein


Download         Length: 380 a.a.        Molecular weight: 42145.94 Da        Isoelectric Point: 7.2090

>NTDB_id=392194 GA721_RS13355 WP_160243624.1 2822912..2824054(+) (dprA) [Acinetobacter indicus strain TQ18]
MLNTISPGHLATIRLWYLVQHSLPSFYKLIRHFGSAAAATEAGNLQRWAELGLHQNHLQRARDFHQAQAQADFQHLLQRV
QQHTDFILIPEDVGYPTQLLPYTDKPPILFGQGQAQPLLQPQVAIVGSRKASPHGRQVAYDFAYYLSEKGFFINSGLAQG
IDEAAHQGGLKHQRTIAVMGTGLDLTYPATHQGLRDQILQRHGTIISEFLPQTKPLQQHFPRRNRIVSGLSLGVIVAEAT
LDSGSLITAKLAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILVDHPEQVIEDLALPTQWLSQQQATSSGTASTATHST
LPKHLLALYSQLDWVGKNMDQLASELQQETAHLTAQLMELELLGMAMQQSGLYLRCRPSQ

Nucleotide


Download         Length: 1143 bp        

>NTDB_id=392194 GA721_RS13355 WP_160243624.1 2822912..2824054(+) (dprA) [Acinetobacter indicus strain TQ18]
ATGCTGAATACGATATCACCCGGTCATCTCGCAACGATTCGCCTGTGGTATCTGGTTCAGCATTCGCTCCCCAGCTTTTA
TAAATTAATCCGGCACTTCGGTTCGGCCGCTGCGGCCACCGAAGCCGGCAACCTGCAGCGCTGGGCAGAACTGGGACTGC
ATCAGAACCATCTGCAACGCGCACGGGATTTTCATCAAGCACAGGCACAAGCCGACTTCCAGCACTTGCTGCAGCGCGTC
CAGCAACATACCGATTTTATTCTTATTCCCGAAGATGTCGGTTACCCCACCCAACTGCTGCCCTATACCGACAAGCCACC
AATTTTATTTGGCCAAGGACAGGCACAACCTTTACTTCAGCCGCAAGTGGCAATTGTCGGCAGTCGCAAAGCCAGTCCGC
ATGGCCGGCAGGTGGCTTATGACTTTGCCTATTATTTAAGTGAAAAAGGCTTTTTTATTAACAGTGGCCTGGCGCAAGGC
ATTGATGAAGCAGCCCATCAGGGTGGCTTGAAACATCAACGTACCATTGCCGTGATGGGTACTGGTCTCGACCTCACCTA
CCCGGCCACACACCAGGGTCTGCGTGACCAGATTCTGCAACGGCATGGCACTATTATCAGTGAGTTCCTGCCACAGACCA
AACCGCTACAGCAGCATTTTCCACGGCGTAACCGCATTGTCAGTGGACTTAGCCTGGGAGTGATTGTGGCCGAAGCCACA
CTGGACAGTGGCTCGCTGATTACCGCCAAACTGGCGGCCGAGCAAGGTAAAACTGTGTTTGCCATTCCGGGACATATTTA
CAGTGAATTTCATCAGGGCTGCCATCAACTGATTCGGGAAGGTGCGATTCTGGTCGATCATCCGGAACAGGTCATTGAAG
ATCTGGCCTTGCCAACCCAATGGCTGAGTCAACAGCAGGCGACCTCATCCGGTACAGCATCTACAGCTACCCACTCGACC
TTGCCCAAACATCTGCTGGCCCTATACAGCCAGCTGGACTGGGTTGGTAAAAACATGGACCAGCTGGCCAGCGAACTGCA
ACAGGAAACCGCCCATTTAACCGCTCAGTTAATGGAACTGGAGCTGCTCGGGATGGCAATGCAGCAATCGGGGCTATATC
TGCGTTGTCGTCCATCGCAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii D1279779

69.761

99.211

0.692

  dprA Acinetobacter baumannii strain A118

69.231

99.211

0.687

  dprA Acinetobacter baylyi ADP1

63.947

100

0.639

  dprA Vibrio cholerae strain A1552

41.867

87.368

0.366


Multiple sequence alignment