Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   GA721_RS13350 Genome accession   NZ_CP045131
Coordinates   2821738..2822895 (+) Length   385 a.a.
NCBI ID   WP_016658990.1    Uniprot ID   V2UEN4
Organism   Acinetobacter indicus strain TQ18     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2816738..2827895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GA721_RS13335 - 2818456..2820507 (-) 2052 WP_160243623.1 TonB-dependent copper receptor -
  GA721_RS13340 - 2820581..2821003 (-) 423 WP_016658991.1 DUF2946 family protein -
  GA721_RS13345 def 2821094..2821618 (-) 525 WP_005181462.1 peptide deformylase -
  GA721_RS13350 tsaP 2821738..2822895 (+) 1158 WP_016658990.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  GA721_RS13355 dprA 2822912..2824054 (+) 1143 WP_160243624.1 DNA-processing protein DprA Machinery gene
  GA721_RS13360 - 2824099..2824665 (+) 567 WP_005181449.1 L-threonylcarbamoyladenylate synthase -
  GA721_RS15055 - 2824823..2824975 (+) 153 WP_228152267.1 hypothetical protein -
  GA721_RS13370 - 2825046..2825957 (-) 912 WP_005181447.1 DMT family transporter -
  GA721_RS13375 - 2826286..2826828 (+) 543 WP_005181445.1 glutathione peroxidase -
  GA721_RS13380 - 2827011..2827619 (+) 609 WP_005181443.1 hypothetical protein -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 42521.54 Da        Isoelectric Point: 8.8330

>NTDB_id=392193 GA721_RS13350 WP_016658990.1 2821738..2822895(+) (tsaP) [Acinetobacter indicus strain TQ18]
MKKVLKGTSSFRALGLKQQALALAVCFSFGVGAVSTVQAAPARNINPPTLQANAPNVYVVKKGDTLWDISKKFLQNPLRW
REIWASNKHVKNPHWIFPGDRLLMCTYDGRPIIGKDEGDGCEGIIRRYTGNTTSLQPQIRVESLNNTIPVIPLEYIQHWL
ERTSIIAPESLQQTPYILGTADQRVLAAKGQNVYARGQGLQVGQRYAVYREGEPYIFTDANGKKYNAGLELTQVASGIAV
RGENDITTLELTDTYNAEVRRGDRVLPEYDPMLPTLFYPTNAEHIAADGQVVRVMGSIGTAAKHSVVTIDRGQAHGVQSG
HVFAVTQKGEVVTDPKTRERVQLPGERIGYAMVFKTFDQLSYAYILDSELPIKVGAGIQPPIMED

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=392193 GA721_RS13350 WP_016658990.1 2821738..2822895(+) (tsaP) [Acinetobacter indicus strain TQ18]
ATGAAAAAGGTTTTGAAGGGCACATCTTCTTTTCGTGCCTTGGGGTTAAAACAGCAGGCGCTGGCACTTGCTGTCTGTTT
CAGTTTTGGGGTGGGCGCAGTCAGTACTGTACAGGCCGCACCGGCACGCAATATCAACCCACCGACCTTACAGGCCAATG
CACCAAATGTGTATGTGGTGAAAAAAGGCGATACGCTGTGGGATATTTCCAAGAAGTTTCTGCAAAACCCGCTGCGCTGG
CGTGAAATCTGGGCCAGCAACAAGCACGTGAAAAATCCGCACTGGATTTTCCCGGGAGATCGCCTGCTGATGTGTACCTA
TGATGGCCGCCCGATCATTGGTAAAGATGAAGGTGATGGCTGTGAAGGTATTATCCGTCGTTATACCGGTAACACCACCA
GCCTGCAGCCGCAAATCCGGGTCGAGTCACTCAACAATACCATTCCGGTGATTCCACTGGAGTACATCCAGCACTGGCTG
GAACGTACCAGCATTATTGCCCCTGAATCTTTGCAACAGACGCCTTATATTTTAGGCACGGCGGATCAGCGTGTCCTGGC
GGCCAAAGGCCAGAATGTCTATGCCCGCGGTCAGGGTCTGCAAGTTGGCCAGCGTTATGCTGTGTATCGTGAAGGCGAAC
CGTATATCTTCACCGATGCCAACGGTAAAAAATACAATGCCGGTCTGGAGCTGACTCAGGTTGCATCCGGTATTGCAGTA
CGCGGTGAAAATGATATTACCACCCTGGAACTGACCGATACCTACAATGCCGAAGTGCGTCGTGGCGATCGTGTGCTGCC
AGAATATGACCCGATGTTACCAACCCTATTCTACCCGACCAATGCCGAACACATTGCAGCAGATGGCCAGGTGGTACGTG
TGATGGGTTCAATTGGGACCGCGGCTAAACACAGTGTGGTCACCATTGACCGCGGTCAGGCGCACGGCGTGCAATCCGGT
CATGTATTTGCTGTAACTCAAAAAGGCGAAGTGGTCACCGATCCGAAAACCCGTGAACGGGTGCAGCTGCCAGGCGAGCG
TATTGGCTATGCCATGGTCTTTAAAACCTTTGACCAGCTCAGCTATGCCTATATTCTGGACAGCGAACTACCAATTAAAG
TCGGGGCCGGTATTCAGCCACCGATTATGGAAGATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V2UEN4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

66.234

100

0.662

Multiple sequence alignment