Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GA660_RS13350 Genome accession   NZ_CP045129
Coordinates   2803601..2805088 (+) Length   495 a.a.
NCBI ID   WP_160241711.1    Uniprot ID   -
Organism   Acinetobacter indicus strain TQ04     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2798601..2810088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GA660_RS13325 ribD 2799513..2800601 (-) 1089 WP_160241709.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  GA660_RS13330 nrdR 2800625..2801083 (-) 459 WP_005181550.1 transcriptional regulator NrdR -
  GA660_RS13335 - 2801223..2802626 (-) 1404 WP_075174920.1 ammonium transporter -
  GA660_RS13340 glnK 2802689..2803027 (-) 339 WP_004650081.1 P-II family nitrogen regulator -
  GA660_RS13345 - 2803304..2803531 (+) 228 WP_160241710.1 accessory factor UbiK family protein -
  GA660_RS13350 comM 2803601..2805088 (+) 1488 WP_160241711.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GA660_RS13355 - 2805148..2805927 (-) 780 WP_103799959.1 TorF family putative porin -
  GA660_RS13360 - 2806688..2807986 (+) 1299 WP_160241712.1 OprD family outer membrane porin -
  GA660_RS13365 ppa 2808095..2808619 (-) 525 WP_016659718.1 inorganic diphosphatase -
  GA660_RS13370 - 2808737..2809138 (-) 402 WP_005181530.1 MAPEG family protein -
  GA660_RS13375 - 2809242..2809628 (+) 387 WP_016659719.1 hypothetical protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54101.13 Da        Isoelectric Point: 7.3353

>NTDB_id=392151 GA660_RS13350 WP_160241711.1 2803601..2805088(+) (comM) [Acinetobacter indicus strain TQ04]
MSFAKIYTRGLLGLNAPSIEVEVHLSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPEQAAENLEFIGELALDGQLRPVTGTLSIAIACQAAGHQLVLPEPNAQEAAQLPDFQVFAASHL
KQVCEHLAQAAPLQPFAASSETRLERYAFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLASILPPLNM
QENLEVASIYSIANTPHRFGQRPFRAPHHTASAIALVGGGSHPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQITFPASFQLIAAMNPCPCGYAFNQDIRCQCSPEMIKRYQNRISGPLLDRIDLHIDVPPLQAHELQSTQPVE
DSATVRERVITAYELQIQRQNKLNMALTPKELEQFAPLNAQTSKMFELAQQKLNLSARAYHRVLRVARSIADLAENSEIQ
PQHLSEALSYRGQQS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=392151 GA660_RS13350 WP_160241711.1 2803601..2805088(+) (comM) [Acinetobacter indicus strain TQ04]
ATGTCTTTTGCCAAAATTTATACGCGGGGTCTGCTTGGACTGAATGCCCCGTCCATTGAAGTTGAAGTCCATTTAAGTCA
GGGTCTGCCCTCCTTAACCATTGTCGGTCTGGCCGAAGCCGCGGTCCGTGAAAGTAAAGACCGGGTTCGCTCGGCCATTA
TTAACAGTGGTTTTCAGTTTCCCACCAAACGTTTGACCATTAATCTGGCCCCGGCCGATTTACCCAAAGATGGCTCACGT
CTGGATTTACCGATTGCCTTAGGCATTCTGATTGCTTCCGGACAATTGCCCGAACAGGCCGCAGAAAACCTGGAATTTAT
TGGTGAACTGGCGCTGGATGGCCAGTTACGCCCGGTCACCGGCACTTTAAGTATTGCCATTGCCTGTCAGGCGGCCGGCC
ATCAACTGGTATTACCGGAACCCAATGCACAGGAAGCCGCACAATTGCCCGACTTTCAGGTGTTTGCGGCCAGTCATCTG
AAACAGGTCTGTGAGCATCTGGCGCAGGCTGCGCCCCTACAGCCTTTTGCAGCAAGCTCGGAAACCCGCTTGGAACGCTA
TGCTTTTGACCTGGCGGATGTCAAAGGACAGCTGCGACCTCGGCGTGCCCTGGAAATTGCCGCTGCCGGTGGCCATTCCT
TGCTCTTTAAAGGTCCACCCGGTACAGGCAAGACTCTCTTGGCCTCACGTCTGGCCAGTATTTTGCCGCCCCTGAATATG
CAGGAAAATCTTGAAGTTGCCAGTATCTATTCAATTGCCAATACCCCACATCGCTTTGGACAGCGGCCGTTTCGAGCCCC
GCATCATACCGCTTCAGCGATTGCACTGGTCGGTGGTGGCTCGCATCCGAAACCGGGCGAAATTACCCTGGCTCATTTAG
GTGTGCTGTTTTTAGATGAACTGCCGGAGTTTGACCGTAAAGTGCTGGAAGTATTGCGGCAGCCCTTGGAATCCAAAGAA
ATTGTGATTTCCCGGGCATCGCGGCAGATTACCTTTCCGGCCAGTTTCCAGCTGATTGCCGCGATGAACCCCTGCCCGTG
TGGCTATGCGTTTAATCAGGATATTCGCTGCCAGTGTTCTCCAGAAATGATCAAGCGTTATCAGAACCGGATTTCTGGGC
CATTACTGGATCGGATTGACCTGCATATCGATGTGCCTCCTCTGCAAGCTCATGAATTACAATCTACACAACCGGTAGAA
GATTCTGCAACCGTTAGGGAGCGTGTGATAACTGCCTACGAACTGCAAATACAAAGACAGAACAAGCTGAATATGGCATT
AACCCCAAAAGAATTAGAGCAATTTGCGCCACTAAATGCTCAGACCAGTAAAATGTTTGAACTTGCCCAACAAAAGTTAA
ATTTATCTGCCCGTGCTTATCATCGGGTATTACGAGTAGCACGAAGCATAGCTGATTTAGCTGAGAATTCAGAAATTCAG
CCTCAGCATTTATCGGAAGCTTTATCTTATCGAGGTCAGCAAAGCTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

51.4

100

0.519
  comM Glaesserella parasuis strain SC1401

51.102

100

0.515
  comM Vibrio cholerae strain A1552

50.909

100

0.509
  comM Vibrio campbellii strain DS40M4

50.707

100

0.507
  comM Legionella pneumophila strain ERS1305867

50.403

100

0.505
  comM Legionella pneumophila str. Paris

50.403

100

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.941

100

0.469

Multiple sequence alignment