Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GA646_RS13980 Genome accession   NZ_CP045127
Coordinates   2752197..2753687 (+) Length   496 a.a.
NCBI ID   WP_160255766.1    Uniprot ID   -
Organism   Acinetobacter indicus strain XG03     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2747197..2758687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GA646_RS13955 ribD 2748109..2749197 (-) 1089 WP_104470531.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  GA646_RS13960 nrdR 2749221..2749679 (-) 459 WP_005181550.1 transcriptional regulator NrdR -
  GA646_RS13965 - 2749819..2751222 (-) 1404 WP_104470532.1 ammonium transporter -
  GA646_RS13970 glnK 2751285..2751623 (-) 339 WP_004650081.1 P-II family nitrogen regulator -
  GA646_RS13975 - 2751900..2752127 (+) 228 WP_075167845.1 accessory factor UbiK family protein -
  GA646_RS13980 comM 2752197..2753687 (+) 1491 WP_160255766.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GA646_RS13985 - 2753761..2754522 (-) 762 WP_160255767.1 TorF family putative porin -
  GA646_RS13990 - 2755281..2756582 (+) 1302 WP_160255768.1 OprD family outer membrane porin -
  GA646_RS13995 ppa 2756682..2757206 (-) 525 WP_005181532.1 inorganic diphosphatase -
  GA646_RS14000 - 2757324..2757725 (-) 402 WP_005181530.1 MAPEG family protein -
  GA646_RS14005 - 2757829..2758215 (+) 387 WP_075167837.1 hypothetical protein -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 54105.03 Da        Isoelectric Point: 7.3595

>NTDB_id=392109 GA646_RS13980 WP_160255766.1 2752197..2753687(+) (comM) [Acinetobacter indicus strain XG03]
MSFAKIYTRGLLGLNAPSIEVEVHLSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPEQAAENLEFIGELALDGQLRPVTGTLSIAIACQAAGHQLVLPEPNAQEAAQLPDFQVFAASHL
KQVCEHLAQAAPLQPFAASSETRLERYAFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLASILPPLNM
QENLEVASIYSIANTPHRFGQRPFRAPHHTASAIALVGGGSHPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQITFPASFQLIAAMNPCPCGYAFNQDIRCQCSAESIKRYQNRISGPLLDRIDLHIDVPPLQAHELHDKTAVE
NSDTVRQRVIQAYERQMQRQGMLNMNLSPKQLEQFAALATPAQNMMDLAQQRLNLSARAYHRVLRVARSIADLDESSEIQ
TAHLSEALSYRAQSSP

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=392109 GA646_RS13980 WP_160255766.1 2752197..2753687(+) (comM) [Acinetobacter indicus strain XG03]
ATGTCTTTTGCCAAAATTTATACGCGGGGTCTGCTTGGACTGAATGCCCCATCTATTGAAGTTGAAGTCCATTTAAGTCA
GGGTCTGCCCTCCTTAACCATTGTCGGTCTGGCCGAAGCCGCGGTCCGTGAAAGTAAAGACCGGGTCCGCTCGGCCATTA
TTAACAGTGGTTTTCAGTTTCCCACCAAACGTTTGACCATTAATCTGGCTCCGGCCGATTTACCCAAAGATGGCTCGCGT
CTGGATTTACCGATTGCCTTAGGCATTTTGATTGCTTCCGGACAATTACCCGAACAGGCCGCAGAAAACCTGGAATTTAT
TGGTGAACTGGCGCTGGATGGCCAATTGCGTCCGGTCACCGGGACTTTAAGTATTGCCATTGCCTGTCAGGCGGCCGGCC
ATCAACTGGTATTACCGGAACCCAATGCGCAGGAAGCCGCACAACTGCCTGACTTTCAGGTGTTTGCAGCCAGTCATCTG
AAACAGGTCTGTGAGCATCTGGCGCAGGCTGCGCCCCTGCAGCCTTTTGCGGCAAGCTCGGAAACCCGCTTGGAACGCTA
TGCTTTTGACCTGGCGGATGTCAAAGGACAGCTGCGACCTCGGCGTGCCCTGGAAATTGCCGCTGCCGGTGGCCATTCCC
TGCTTTTTAAAGGACCGCCCGGCACAGGCAAAACCCTCTTGGCCTCACGTCTGGCCAGTATTTTGCCGCCCCTGAATATG
CAGGAAAATCTTGAAGTTGCCAGTATTTATTCAATTGCCAATACCCCGCATCGCTTTGGACAGCGGCCATTTCGCGCCCC
GCATCATACCGCTTCAGCGATTGCGCTGGTCGGTGGTGGCTCGCATCCGAAACCGGGCGAAATTACCTTGGCCCATTTAG
GTGTGCTGTTTTTAGATGAACTGCCGGAGTTTGACCGTAAAGTGCTGGAGGTATTGCGGCAGCCCTTGGAATCCAAGGAA
ATTGTGATTTCCCGGGCATCGCGGCAGATTACCTTTCCGGCCAGTTTCCAGCTGATTGCCGCGATGAACCCCTGCCCGTG
TGGCTATGCGTTTAATCAGGATATTCGCTGCCAATGTTCCGCAGAAAGTATTAAACGCTACCAGAACCGGATTTCTGGCC
CACTCCTGGACCGGATTGATTTGCATATTGATGTACCACCATTACAGGCCCATGAGTTACATGATAAAACTGCGGTGGAA
AACTCAGATACGGTTCGCCAGCGGGTGATTCAGGCCTATGAACGGCAAATGCAACGCCAAGGTATGCTGAATATGAACTT
AAGTCCAAAACAGCTGGAACAGTTTGCTGCCTTAGCCACACCAGCACAGAACATGATGGATCTGGCCCAGCAGCGCTTAA
ACCTGTCGGCTCGCGCCTATCATCGGGTCTTAAGAGTGGCGCGCAGTATTGCCGATTTGGACGAAAGTAGCGAGATTCAA
ACTGCTCATTTATCGGAAGCGCTGTCTTATCGGGCGCAGTCCAGCCCATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.806

100

0.508
  comM Legionella pneumophila str. Paris

50.806

100

0.508
  comM Legionella pneumophila strain ERS1305867

50.806

100

0.508
  comM Haemophilus influenzae Rd KW20

49.9

100

0.504
  comM Vibrio campbellii strain DS40M4

50.202

100

0.502
  comM Glaesserella parasuis strain SC1401

49.8

100

0.502
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.047

100

0.47

Multiple sequence alignment