Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GA645_RS27195 Genome accession   NZ_CP045118
Coordinates   5970898..5972388 (+) Length   496 a.a.
NCBI ID   WP_152227279.1    Uniprot ID   -
Organism   Pseudomonas sp. SCB32     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5965898..5977388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GA645_RS27165 - 5966604..5967296 (+) 693 WP_152227269.1 HAD family hydrolase -
  GA645_RS27170 sutA 5967499..5967831 (-) 333 WP_152227271.1 transcriptional regulator SutA -
  GA645_RS27175 - 5967910..5968335 (-) 426 WP_152227273.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  GA645_RS27180 - 5968442..5969776 (-) 1335 WP_152227275.1 ammonium transporter -
  GA645_RS27185 glnK 5969817..5970155 (-) 339 WP_003457590.1 P-II family nitrogen regulator -
  GA645_RS27190 - 5970570..5970845 (+) 276 WP_152227277.1 accessory factor UbiK family protein -
  GA645_RS27195 comM 5970898..5972388 (+) 1491 WP_152227279.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GA645_RS27200 - 5972385..5972873 (-) 489 WP_152227281.1 RidA family protein -
  GA645_RS27205 - 5972902..5973132 (-) 231 WP_152227283.1 DUF1127 domain-containing protein -
  GA645_RS27210 - 5973319..5974767 (+) 1449 WP_152227284.1 PLP-dependent aminotransferase family protein -
  GA645_RS27215 - 5974867..5975670 (+) 804 WP_152227286.1 TlpA disulfide reductase family protein -
  GA645_RS27220 - 5975836..5976312 (-) 477 WP_152227288.1 Bro-N domain-containing protein -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 52530.20 Da        Isoelectric Point: 7.5635

>NTDB_id=392046 GA645_RS27195 WP_152227279.1 5970898..5972388(+) (comM) [Pseudomonas sp. SCB32]
MSLAVVHSRAQVGVEAPGVTVEAHLANGLPSLTLVGLPEGAVKESKDRVRSALLNAGFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASGQLADASGLDDLECLGELALSGTLRPVPGVLPAALAARAAGRALVVPKENAEEASLASGLTVYAVGH
LLELAAHFSGQERLRPYEANGLLRSTPPYPDLAEVQGQTAAKRALLVAAAGAHNLLLSGPPGTGKTLLASRLPGLMPPLD
EDEALQVAAIHSVAGRGPLTHWPQRPFRQPHHTASAPALVGGGSRPQPGEITLAHEGVLFLDELPEFDRKVLEVLREPLE
GGEIVISRANGRVRFPARFQLVAAMNPCPCGYLGDPSGRCRCTPEQIQRYRAKLSGPLLDRIDLHLTVSRESTSLAPSGP
STSSAELAVQVAAARQRQLDRQGCANAFLDLKKMHQHCALSPEDQAWLEKAGERLNLSLRALHRILKVARTLADLQQAES
IARPHLAEALQYRAGH

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=392046 GA645_RS27195 WP_152227279.1 5970898..5972388(+) (comM) [Pseudomonas sp. SCB32]
ATGTCCCTCGCCGTCGTCCACAGCCGTGCCCAGGTCGGTGTAGAAGCACCCGGTGTCACCGTCGAGGCGCATCTGGCCAA
CGGCCTGCCGTCGCTGACCCTGGTCGGCCTGCCCGAAGGCGCCGTGAAGGAGAGCAAGGACCGCGTCCGCAGCGCCCTGC
TCAATGCCGGCTTCGACTTCCCCGCCCGTCGCATCACCCTGAATCTCGCCCCGGCCGACCTGCCGAAGGACGGCGGGCGC
TTCGACCTGGCCATTGCCCTGGGCATCCTCGCCGCCAGCGGGCAACTCGCCGATGCCAGCGGCCTGGATGATCTGGAATG
CCTGGGTGAACTGGCGCTGTCCGGCACCCTGCGCCCGGTGCCTGGCGTATTGCCCGCCGCACTGGCCGCCCGCGCCGCCG
GGCGGGCGCTGGTGGTGCCGAAGGAGAATGCCGAGGAAGCCAGCCTCGCCAGCGGGCTGACCGTCTATGCGGTCGGCCAT
CTGCTGGAACTGGCCGCGCACTTCAGCGGCCAGGAGCGCCTGCGTCCCTACGAGGCGAACGGCCTGCTGCGCAGCACGCC
GCCCTACCCCGATCTTGCCGAAGTGCAGGGCCAGACGGCTGCCAAGCGCGCCCTATTGGTGGCCGCCGCCGGGGCGCACA
ACCTCCTGCTCAGCGGCCCGCCCGGCACCGGCAAGACACTCCTGGCCAGCCGCCTGCCCGGCCTGATGCCGCCACTGGAT
GAAGACGAAGCCTTGCAGGTGGCGGCAATCCATTCCGTCGCCGGACGCGGCCCCTTGACCCACTGGCCGCAACGCCCCTT
CCGCCAGCCGCACCATACGGCGTCGGCACCCGCGCTGGTCGGCGGCGGCAGTCGCCCACAGCCGGGTGAGATCACGCTGG
CCCATGAAGGGGTGCTTTTCCTGGATGAGCTTCCGGAGTTCGATCGCAAGGTGCTTGAGGTGCTGAGAGAACCCTTGGAA
GGTGGCGAAATTGTCATCTCCCGCGCCAACGGCCGCGTGCGCTTCCCGGCTCGCTTCCAGCTGGTGGCGGCGATGAACCC
CTGCCCGTGCGGCTATCTCGGCGACCCCAGCGGCCGCTGCCGCTGCACGCCGGAACAGATCCAGCGCTATCGCGCCAAGC
TCTCCGGGCCGCTACTGGACCGCATCGACCTGCACCTGACTGTCAGCCGCGAGAGCACCAGCCTCGCCCCCAGCGGCCCC
AGCACCAGCAGTGCCGAGCTGGCCGTGCAGGTCGCCGCCGCGCGCCAGCGCCAGCTGGACCGACAGGGCTGCGCAAATGC
TTTCCTCGACCTGAAGAAGATGCACCAACATTGTGCATTGAGCCCGGAAGACCAGGCATGGCTGGAAAAAGCCGGCGAGC
GCCTGAACCTTTCGTTGCGCGCCCTGCACCGGATTCTCAAGGTGGCGCGCACCCTGGCCGACCTGCAGCAGGCGGAGAGC
ATCGCCCGCCCCCACCTGGCCGAAGCGCTGCAGTACCGGGCGGGGCACTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

56.064

100

0.569
  comM Vibrio cholerae strain A1552

55.332

100

0.554
  comM Glaesserella parasuis strain SC1401

53.968

100

0.548
  comM Vibrio campbellii strain DS40M4

54.527

100

0.546
  comM Legionella pneumophila str. Paris

49.31

100

0.504
  comM Legionella pneumophila strain ERS1305867

49.31

100

0.504
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.421

100

0.482

Multiple sequence alignment