Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GBN93_RS01025 Genome accession   NZ_CP045103
Coordinates   219807..221294 (-) Length   495 a.a.
NCBI ID   WP_234965150.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain AJ413     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 214807..226294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBN93_RS01000 (GBN93_01015) - 214898..215302 (+) 405 WP_005401007.1 MAPEG family protein -
  GBN93_RS01005 (GBN93_01020) ppa 215421..215945 (+) 525 WP_004692877.1 inorganic diphosphatase -
  GBN93_RS01010 (GBN93_01025) - 216048..217388 (-) 1341 WP_234965148.1 OprD family outer membrane porin -
  GBN93_RS01015 (GBN93_01030) - 217848..218618 (+) 771 WP_234965149.1 TorF family putative porin -
  GBN93_RS01020 (GBN93_01035) - 218965..219735 (+) 771 WP_058868716.1 TorF family putative porin -
  GBN93_RS01025 (GBN93_01040) comM 219807..221294 (-) 1488 WP_234965150.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GBN93_RS01030 (GBN93_01045) - 221360..221587 (-) 228 WP_004692854.1 accessory factor UbiK family protein -
  GBN93_RS01035 (GBN93_01050) glnK 221863..222201 (+) 339 WP_004281042.1 P-II family nitrogen regulator -
  GBN93_RS01040 (GBN93_01055) - 222261..223664 (+) 1404 WP_010325684.1 ammonium transporter -
  GBN93_RS01045 (GBN93_01060) nrdR 223816..224274 (+) 459 WP_004692852.1 transcriptional regulator NrdR -
  GBN93_RS01050 (GBN93_01065) ribD 224289..225392 (+) 1104 WP_234965151.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54374.25 Da        Isoelectric Point: 8.0050

>NTDB_id=391935 GBN93_RS01025 WP_234965150.1 219807..221294(-) (comM) [Acinetobacter johnsonii strain AJ413]
MSFAKIYTRALLGLHAPSVEVEVHLSQGLPSLTIVGLPEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDSSR
LDLPIALGILIASGQLPEQGTENFEFIGELALDGQLRPISGTLSIAIACQQAGHQLILPEANAQEASQLPNFQVFAAQHL
KQVCEHLSQNHLIQQFQPTALKASQHYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLASILPPLNT
QENLEVASIYSVANHQHPFGQRPFRAPHHTASAVALVGGGSQPKPGEITLAHKGVLFLDELPEFDRKVLEVLRQPIEAKE
IVISRASRQITFPANFQLIAAMNPCPCGYAFNQDSRCQCSAEAIKRYQNRISGPLLDRIDLHIDVPPLHASELQDTQVVE
DSATVRERVIQAYQWQMQRQACLNMALSPKQLEQFAPLDGQAALIFEKAQQRINLSARGYHRILRVARTIADLAQSEHIQ
TGHLTEALSYRQQNA

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=391935 GBN93_RS01025 WP_234965150.1 219807..221294(-) (comM) [Acinetobacter johnsonii strain AJ413]
ATGTCTTTTGCCAAAATTTACACTCGAGCTTTGCTCGGTTTACACGCACCTTCGGTTGAAGTTGAAGTTCATCTGAGCCA
AGGACTACCCTCTTTAACCATTGTGGGGCTTCCTGAAGCAGCCGTTCGGGAAAGCAAAGATCGGGTGCGCTCCGCCATTA
TCAATAGTGGCTTTCAGTTTCCGACCAAACGCCTCACCATTAACCTTGCACCTGCAGATCTGCCCAAAGACAGCTCGCGG
TTGGATTTGCCTATTGCACTGGGTATTTTAATTGCCTCTGGTCAGCTCCCTGAGCAAGGAACTGAAAATTTTGAATTTAT
AGGTGAGTTGGCACTTGATGGGCAACTGCGACCAATTTCAGGTACTTTAAGTATTGCGATTGCCTGCCAGCAAGCTGGGC
ATCAACTGATTTTACCTGAGGCCAATGCGCAAGAAGCCTCTCAACTGCCCAACTTTCAAGTGTTTGCAGCGCAACATTTA
AAACAAGTCTGTGAGCATCTGTCGCAAAACCATCTCATCCAACAGTTTCAACCCACGGCGCTAAAAGCCTCACAGCACTA
CAAATTTGATTTGGCCGATGTTAAAGGTCAACTGCGTCCGAGACGTGCCTTAGAGATTGCGGCAGCAGGCGGTCATTCTT
TGCTATTTAAAGGACCGCCAGGGACAGGGAAAACCCTATTGGCTTCACGTTTAGCCAGTATTCTCCCACCCTTGAACACG
CAAGAGAATTTGGAAGTGGCGAGTATTTACTCGGTGGCCAATCATCAACATCCTTTTGGGCAGCGGCCATTTCGTGCACC
GCACCATACAGCTTCTGCGGTTGCCTTAGTCGGTGGCGGGTCACAACCCAAACCCGGTGAAATTACTTTGGCACATAAAG
GCGTGCTGTTTTTAGATGAACTACCAGAGTTTGACCGCAAGGTTTTAGAGGTTTTAAGACAGCCGATTGAAGCCAAAGAG
ATTGTGATTTCGCGTGCTTCACGGCAGATCACCTTTCCAGCCAATTTCCAACTAATTGCCGCAATGAATCCGTGTCCCTG
TGGTTATGCGTTTAATCAAGATAGCCGTTGTCAGTGCTCAGCCGAGGCGATTAAACGCTACCAAAACCGTATTTCCGGGC
CTTTGCTGGATCGAATTGATTTACATATTGATGTACCACCCTTGCATGCGTCTGAATTACAAGACACACAAGTCGTAGAA
GACTCGGCAACTGTACGTGAGCGCGTGATTCAAGCTTATCAATGGCAAATGCAGCGCCAAGCTTGTCTCAATATGGCTTT
ATCACCCAAACAACTCGAACAATTCGCACCGCTAGATGGACAAGCGGCTTTAATCTTTGAAAAAGCACAACAGCGTATAA
ATTTGTCTGCTCGGGGTTATCACCGGATTTTAAGAGTGGCCAGAACCATTGCGGATTTGGCCCAGTCAGAGCACATTCAA
ACGGGACATTTGACTGAAGCTCTCTCCTACCGACAGCAAAATGCCTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

51.303

100

0.517
  comM Glaesserella parasuis strain SC1401

50.701

100

0.511
  comM Vibrio cholerae strain A1552

50.4

100

0.509
  comM Vibrio campbellii strain DS40M4

50.602

100

0.509
  comM Legionella pneumophila str. Paris

50.402

100

0.507
  comM Legionella pneumophila strain ERS1305867

50.402

100

0.507
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.545

100

0.465

Multiple sequence alignment