Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GBN68_RS00880 Genome accession   NZ_CP045101
Coordinates   192071..193558 (-) Length   495 a.a.
NCBI ID   WP_234955027.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain AJ210     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 187071..198558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBN68_RS00855 (GBN68_00860) - 187180..187584 (+) 405 WP_005401007.1 MAPEG family protein -
  GBN68_RS00860 (GBN68_00865) ppa 187702..188226 (+) 525 WP_004692877.1 inorganic diphosphatase -
  GBN68_RS00865 (GBN68_00870) - 188329..189642 (-) 1314 WP_005401006.1 OprD family outer membrane porin -
  GBN68_RS00870 (GBN68_00875) - 190102..190872 (+) 771 WP_114836633.1 TorF family putative porin -
  GBN68_RS00875 (GBN68_00880) - 191219..191962 (+) 744 WP_004692873.1 TorF family putative porin -
  GBN68_RS00880 (GBN68_00885) comM 192071..193558 (-) 1488 WP_234955027.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GBN68_RS00885 (GBN68_00890) - 193624..193851 (-) 228 WP_004692854.1 accessory factor UbiK family protein -
  GBN68_RS00890 (GBN68_00895) glnK 194125..194463 (+) 339 WP_004281042.1 P-II family nitrogen regulator -
  GBN68_RS00895 (GBN68_00900) - 194523..195926 (+) 1404 WP_010325684.1 ammonium transporter -
  GBN68_RS00900 (GBN68_00905) nrdR 196078..196536 (+) 459 WP_004692852.1 transcriptional regulator NrdR -
  GBN68_RS00905 (GBN68_00910) ribD 196551..197654 (+) 1104 WP_234955029.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54335.17 Da        Isoelectric Point: 7.8149

>NTDB_id=391893 GBN68_RS00880 WP_234955027.1 192071..193558(-) (comM) [Acinetobacter johnsonii strain AJ210]
MSFAKIYTRALLGLHAPSVEVEVHLSQGLPSLTIVGLPEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDSSR
LDLPIALGILIASGQLPEQGTENFEFIGELALDGQLRPISGALSIAIACQQAGHQLILPEANAQEASQLPNFQVFAAQHL
KQVCEHLSQNHLIQQFQPTALKASQHYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLASILPPLNT
QENLEVASIYSVANHQHPFGQRPFRAPHHTASAVALVGGGSQPKPGEITLAHKGVLFLDELPEFDRKVLEVLRQPIEAKE
IVISRASRQITFPANFQLIAAMNPCPCGYAFNQDSRCQCSAEAIKRYQNRISGPLLDRIDLHIDVPPLHASELQDTQAVE
DSATVRERVIQAYEWQMQRQACLNMALSPKQLEQFAPLDGQAALIFEKAQQRLNLSARGYHRILRVARTIADLAQSEHIQ
TGHLTEALSYRGQHH

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=391893 GBN68_RS00880 WP_234955027.1 192071..193558(-) (comM) [Acinetobacter johnsonii strain AJ210]
ATGTCTTTTGCCAAAATTTACACTCGAGCTTTGCTCGGTTTACACGCACCTTCGGTTGAAGTTGAAGTTCATCTGAGCCA
AGGACTACCCTCTTTAACCATTGTGGGGCTTCCTGAAGCAGCCGTTCGGGAAAGCAAAGATCGGGTGCGCTCCGCCATTA
TCAATAGTGGCTTTCAGTTTCCGACTAAACGCCTCACCATCAACCTTGCGCCCGCAGATCTGCCCAAAGACAGCTCACGG
TTGGATTTGCCTATTGCACTGGGTATTTTAATTGCCTCTGGTCAGCTCCCTGAGCAAGGAACTGAAAATTTTGAATTTAT
AGGTGAGTTGGCACTTGATGGGCAACTGCGACCAATTTCAGGTGCTTTAAGTATTGCGATTGCCTGCCAGCAAGCTGGGC
ATCAACTGATTTTACCTGAGGCCAATGCGCAAGAAGCCTCTCAACTGCCCAACTTTCAAGTGTTTGCAGCGCAACATTTA
AAACAAGTCTGTGAGCATCTGTCACAAAACCATCTCATCCAACAGTTTCAGCCCACGGCGCTAAAAGCCTCTCAGCACTA
CAAATTTGATTTGGCCGATGTTAAAGGTCAACTGCGTCCAAGACGCGCCTTAGAGATTGCGGCAGCAGGTGGTCATTCTT
TACTGTTTAAAGGACCGCCAGGGACAGGGAAAACCCTATTGGCTTCACGTTTAGCCAGTATTTTACCGCCCTTGAACACG
CAAGAGAATTTGGAAGTGGCGAGTATTTACTCAGTGGCCAATCATCAACATCCTTTTGGGCAGCGGCCATTTCGTGCACC
GCACCATACGGCTTCTGCGGTTGCCTTAGTCGGTGGCGGATCACAACCCAAACCCGGTGAAATTACTTTGGCACATAAAG
GCGTGCTGTTTTTAGATGAATTACCAGAGTTTGACCGCAAGGTTTTAGAGGTTTTAAGACAGCCGATTGAAGCCAAAGAG
ATTGTGATTTCACGTGCTTCACGGCAGATCACCTTTCCAGCCAATTTCCAACTGATTGCCGCAATGAATCCGTGTCCCTG
TGGTTATGCTTTTAATCAAGATAGCCGTTGCCAGTGCTCAGCCGAGGCAATTAAGCGCTACCAAAACCGTATTTCCGGGC
CTTTGCTGGATCGTATTGATTTACATATTGATGTACCACCCTTGCATGCTTCTGAATTGCAGGACACACAAGCCGTGGAA
GACTCGGCAACTGTACGTGAACGCGTGATTCAAGCTTATGAATGGCAAATGCAACGCCAAGCTTGTCTCAATATGGCTTT
ATCACCCAAACAACTCGAACAATTCGCACCGCTAGATGGACAAGCGGCTTTAATCTTTGAAAAAGCACAGCAGCGTTTAA
ATTTGTCTGCTCGGGGTTATCATCGGATTTTAAGAGTGGCCAGAACCATTGCGGATTTGGCCCAGTCAGAGCATATTCAA
ACGGGACATTTAACCGAAGCCCTGTCTTATCGTGGGCAACATCACTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

51.703

100

0.521
  comM Glaesserella parasuis strain SC1401

51.102

100

0.515
  comM Vibrio cholerae strain A1552

51.107

100

0.513
  comM Legionella pneumophila str. Paris

50.6

100

0.511
  comM Legionella pneumophila strain ERS1305867

50.6

100

0.511
  comM Vibrio campbellii strain DS40M4

51.111

100

0.511
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.941

100

0.469

Multiple sequence alignment