Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   F9230_RS16175 Genome accession   NZ_CP045099
Coordinates   3377487..3378974 (+) Length   495 a.a.
NCBI ID   WP_234950838.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain AJ14     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 3372487..3383974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F9230_RS16150 (F9230_16195) ribD 3373389..3374492 (-) 1104 WP_234950836.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  F9230_RS16155 (F9230_16200) nrdR 3374507..3374965 (-) 459 WP_004692852.1 transcriptional regulator NrdR -
  F9230_RS16160 (F9230_16205) - 3375117..3376520 (-) 1404 WP_234950837.1 ammonium transporter -
  F9230_RS16165 (F9230_16210) glnK 3376580..3376918 (-) 339 WP_004281042.1 P-II family nitrogen regulator -
  F9230_RS16170 (F9230_16215) - 3377194..3377421 (+) 228 WP_004692854.1 accessory factor UbiK family protein -
  F9230_RS16175 (F9230_16220) comM 3377487..3378974 (+) 1488 WP_234950838.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  F9230_RS16180 (F9230_16225) - 3379046..3379816 (-) 771 WP_168159866.1 TorF family putative porin -
  F9230_RS16185 (F9230_16230) - 3380163..3380933 (-) 771 WP_234950839.1 TorF family putative porin -
  F9230_RS16190 (F9230_16235) - 3381393..3382685 (+) 1293 WP_234950840.1 OprD family outer membrane porin -
  F9230_RS16195 (F9230_16240) ppa 3382790..3383314 (-) 525 WP_004692877.1 inorganic diphosphatase -
  F9230_RS16200 (F9230_16245) - 3383432..3383836 (-) 405 WP_005401007.1 MAPEG family protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54404.27 Da        Isoelectric Point: 8.0050

>NTDB_id=391884 F9230_RS16175 WP_234950838.1 3377487..3378974(+) (comM) [Acinetobacter johnsonii strain AJ14]
MSFAKIYTRALLGLHAPSVEVEVHLSQGLPSLTIVGLPEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDSSR
LDLPIALGILIASGQLPEQGTENFEFIGELALDGQLRPISGTLSIAIACQQAGHQLILPEANAQEASQLPNFQVFAAQHL
KQVCEHLSQNHLIQQFQPTALKASQHYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLASILPPLNT
QENLEVASIYSVANHQHPFGQRPFRAPHHTASAVALVGGGSQPKPGEITLAHKGVLFLDELPEFDRKVLEVLRQPIEAKE
IVISRASRQITFPANFQLIAAMNPCPCGYAFNQDSRCQCSAEAIKRYQNRISGPLLDRIDLHIDVPPLHASELQDTQVVE
DSATVRERVIQAYQWQMQRQACLNMALSPKQLEQFTPLDGQAALIFEKAQQRLNLSARGYHRILRVARTIADLAQSEHIQ
TGHLTEALSYRQQNA

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=391884 F9230_RS16175 WP_234950838.1 3377487..3378974(+) (comM) [Acinetobacter johnsonii strain AJ14]
ATGTCTTTTGCCAAAATTTACACTCGAGCTTTGCTCGGTTTACACGCACCTTCGGTTGAAGTTGAAGTTCATCTGAGCCA
AGGACTACCCTCTTTAACCATTGTGGGGCTTCCTGAAGCAGCCGTTCGGGAAAGCAAAGATCGGGTGCGCTCCGCCATTA
TCAATAGTGGTTTTCAGTTTCCGACCAAACGCCTCACCATCAACCTTGCACCCGCAGACCTGCCCAAAGACAGCTCACGA
CTGGATTTGCCTATTGCACTGGGTATTTTAATTGCCTCTGGTCAGCTCCCTGAGCAAGGAACTGAAAATTTTGAATTTAT
AGGTGAGTTGGCACTTGATGGGCAACTGCGACCAATTTCAGGTACTTTAAGTATTGCAATTGCCTGCCAGCAAGCTGGGC
ATCAACTGATTTTACCAGAGGCCAATGCGCAAGAAGCCTCTCAACTGCCCAACTTTCAAGTGTTTGCAGCGCAACATTTA
AAACAAGTCTGTGAGCATCTGTCGCAAAACCATCTCATCCAACAGTTTCAACCCACGGCGTTAAAAGCCTCTCAGCACTA
CAAATTTGATTTGGCCGATGTTAAAGGTCAACTGCGTCCGAGACGTGCCTTAGAGATTGCGGCGGCAGGTGGTCATTCTT
TACTGTTTAAAGGACCGCCAGGGACAGGGAAAACCCTATTGGCTTCACGTTTAGCCAGTATTCTACCGCCCTTGAACACG
CAAGAGAATTTGGAAGTGGCGAGTATTTACTCGGTGGCCAATCATCAACATCCTTTTGGGCAGCGGCCATTTCGTGCACC
GCACCATACGGCTTCTGCGGTTGCCTTAGTCGGTGGCGGGTCACAACCCAAACCCGGTGAAATTACTTTGGCACATAAAG
GCGTGCTGTTTTTAGATGAACTACCAGAGTTTGACCGCAAGGTTTTAGAGGTTTTAAGACAGCCGATAGAAGCCAAAGAG
ATTGTGATTTCGCGTGCTTCACGACAGATCACCTTTCCAGCCAATTTCCAACTGATTGCTGCAATGAATCCTTGTCCCTG
TGGTTATGCTTTTAATCAAGATAGCCGTTGCCAGTGCTCAGCCGAGGCGATTAAACGCTACCAAAACCGTATTTCAGGGC
CGTTACTGGATCGGATTGATTTACATATTGATGTACCACCCTTGCATGCTTCTGAATTGCAGGACACACAAGTCGTAGAA
GACTCGGCAACTGTACGTGAGCGCGTGATTCAAGCTTATCAATGGCAAATGCAGCGCCAAGCTTGTCTCAATATGGCTTT
ATCACCCAAACAACTCGAACAATTCACACCGCTAGATGGACAAGCTGCTTTAATCTTTGAAAAAGCACAACAGCGTTTAA
ATTTGTCTGCTCGGGGTTATCACCGCATTTTAAGAGTCGCCAGAACCATTGCGGATTTGGCCCAATCAGAGCACATCCAA
ACAGGACATTTGACTGAAGCTCTCTCCTACCGACAGCAAAATGCCTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

51.503

100

0.519
  comM Glaesserella parasuis strain SC1401

50.902

100

0.513
  comM Vibrio cholerae strain A1552

50.6

100

0.511
  comM Vibrio campbellii strain DS40M4

50.803

100

0.511
  comM Legionella pneumophila str. Paris

50.602

100

0.509
  comM Legionella pneumophila strain ERS1305867

50.602

100

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.743

100

0.467

Multiple sequence alignment