Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   GAN21_RS01535 Genome accession   NZ_CP045086
Coordinates   337928..340078 (-) Length   716 a.a.
NCBI ID   WP_015728741.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain KCTC 43136     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 332928..345078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GAN21_RS01520 recQ 333076..334857 (-) 1782 WP_015728744.1 DNA helicase RecQ -
  GAN21_RS01525 - 334867..336744 (-) 1878 WP_015728743.1 ABC-F family ATP-binding cassette domain-containing protein -
  GAN21_RS01530 - 336856..337671 (+) 816 WP_015728742.1 ZIP family metal transporter -
  GAN21_RS01535 comA 337928..340078 (-) 2151 WP_015728741.1 peptide cleavage/export ABC transporter Regulator
  GAN21_RS01540 - 340203..340385 (-) 183 WP_037543780.1 hypothetical protein -
  GAN21_RS01545 - 340457..340765 (-) 309 WP_049770161.1 DUF3884 family protein -
  GAN21_RS01550 - 340837..342126 (-) 1290 WP_051144739.1 glycosyltransferase -
  GAN21_RS12890 - 343218..343601 (-) 384 Protein_313 ISL3 family transposase -

Sequence

Protein


Download         Length: 716 a.a.        Molecular weight: 81659.38 Da        Isoelectric Point: 9.8385

>NTDB_id=391772 GAN21_RS01535 WP_015728741.1 337928..340078(-) (comA) [Staphylococcus pseudintermedius strain KCTC 43136]
MKFSKRFYRAQVDSQDCGAAALAMILEFYGSHYSLDFLRRKLRTTVNGTTAYGLVQVADKLGFETVPIKADISLFEIDDV
QYPFIVHVKKNNNHFHYYVVIRCDKKYIYIADPDPVVNLTKMTYREFKEEWTGVTILLKPTSLYKPIKQDKVRLTSFIPL
LLKEKRLIIKIIIISILVNMINILGSYFMKSIIDFYIPQKLKTWVSMISMALIASYIIQQILSYLQKYFLILLVKTYSIN
ILSPYIKHLFRLPITFFETRRAGDILSRLNDANSITDALASTMLSLFLDVTIIVGISIFLYYQSTILFVLILIIIPIYAV
IVFGFMNSFERKRIKSMEANATLSSYLMENITGMETIKALTCEKKCYKQIKYNFSNYYEKTFLLNKLNIKQNVLKKVVQL
ILNVSILWVGANLVIDNQISIGTLLVFNSLVIYFMNPIENIMNLQLKLQIAGVANNRLNEIFTVKSEFEKNKLDIKLNQN
SSKLIFSNISYGYGYEKEILTDINITIEHNSKVAFIGESGSGKTTLAKMMVSFFEPSKGKITLGGLDITNINKSVLRQQI
IYIPQQTYIFNGTILENLLLGVVKEVTQKDIDSAIKMAELKSFIDSLPLGLDSVLSSDFSALSGGQRQKIALARALLTNS
SILIMDEATSNIDILTERKIINNLMALNKTIIFISHNLNITQKVDKIFVLAKGKIIEEGSHEFLLKAKGYYSNLIN

Nucleotide


Download         Length: 2151 bp        

>NTDB_id=391772 GAN21_RS01535 WP_015728741.1 337928..340078(-) (comA) [Staphylococcus pseudintermedius strain KCTC 43136]
ATGAAATTTTCAAAACGATTTTATCGTGCACAAGTAGATTCTCAAGATTGTGGCGCGGCAGCGCTCGCTATGATATTAGA
ATTTTACGGTTCTCACTATTCTTTGGATTTTCTGAGAAGAAAGTTAAGAACAACAGTAAATGGCACTACAGCATATGGTT
TGGTTCAGGTAGCAGATAAGTTAGGTTTTGAGACAGTTCCTATTAAAGCAGATATATCTTTGTTTGAAATTGATGATGTA
CAGTATCCTTTTATCGTTCATGTTAAAAAAAATAACAATCATTTTCACTATTATGTTGTAATTAGATGTGATAAAAAGTA
TATCTATATAGCTGACCCTGACCCTGTTGTTAATTTAACAAAGATGACTTATAGGGAATTTAAAGAAGAGTGGACTGGAG
TTACAATCTTATTAAAACCTACATCTTTATATAAACCTATAAAGCAAGATAAAGTTCGTTTAACTTCTTTTATACCTTTA
TTATTAAAAGAAAAAAGGTTGATTATAAAAATAATAATTATTTCCATTTTAGTCAATATGATAAATATTTTAGGTTCATA
TTTTATGAAGTCAATTATTGATTTTTATATTCCGCAAAAGTTAAAAACATGGGTTAGTATGATTTCCATGGCTTTAATTG
CTTCTTACATTATACAACAAATTCTTAGTTATTTGCAGAAATATTTTTTGATTTTATTAGTAAAGACATATTCTATAAAT
ATACTTTCACCATACATTAAACATTTGTTTAGATTACCTATTACTTTTTTTGAAACGAGAAGAGCAGGAGACATACTATC
AAGACTTAATGATGCAAATTCAATTACTGACGCTTTAGCTAGTACCATGCTATCATTGTTTTTAGATGTTACAATAATAG
TTGGAATATCTATCTTCCTGTATTATCAAAGTACTATTTTATTTGTATTAATATTAATTATCATTCCTATTTATGCCGTA
ATTGTTTTTGGTTTTATGAACTCTTTTGAACGGAAAAGAATAAAATCTATGGAGGCAAATGCTACTTTGTCTTCTTATTT
GATGGAAAATATAACAGGTATGGAGACGATAAAAGCACTGACATGTGAAAAGAAATGCTATAAGCAGATAAAATATAATT
TTTCGAATTATTACGAAAAAACATTCTTGTTAAACAAACTAAATATAAAGCAAAACGTTTTGAAAAAGGTTGTTCAATTA
ATATTAAATGTATCGATTTTATGGGTAGGCGCTAACCTAGTTATAGATAATCAAATCTCAATTGGAACTTTGCTTGTTTT
TAATTCATTAGTGATTTACTTTATGAATCCAATAGAAAATATTATGAATTTACAGCTTAAATTACAAATAGCAGGTGTGG
CTAATAATCGATTGAATGAAATATTCACAGTTAAATCAGAATTTGAAAAGAATAAATTGGATATCAAATTGAACCAAAAC
TCAAGTAAACTTATATTTTCAAATATTTCATATGGATATGGGTACGAAAAAGAAATCCTTACAGATATTAATATAACAAT
AGAACATAATAGTAAAGTAGCCTTTATTGGAGAGTCTGGATCAGGTAAAACAACTTTGGCGAAAATGATGGTTAGTTTTT
TTGAACCTTCAAAGGGTAAAATAACACTAGGTGGATTGGACATAACAAATATCAATAAATCTGTTTTACGACAGCAGATT
ATATACATTCCACAACAAACTTATATTTTTAATGGAACTATACTTGAAAATCTTTTATTAGGGGTAGTTAAAGAGGTTAC
GCAAAAGGACATAGATAGTGCTATTAAAATGGCTGAACTAAAATCCTTTATTGATAGCTTACCACTTGGACTTGATAGTG
TATTAAGTTCTGATTTTTCTGCTTTGTCAGGAGGTCAGCGGCAGAAGATAGCTTTAGCAAGAGCACTATTAACAAATTCT
TCTATATTGATAATGGATGAAGCAACGAGTAATATTGATATACTCACGGAGAGAAAAATTATTAATAATTTGATGGCGTT
AAACAAAACTATTATATTTATCTCCCATAATCTAAATATAACTCAAAAAGTAGATAAAATATTTGTTTTAGCAAAAGGAA
AAATTATAGAAGAGGGCTCACATGAATTTTTATTAAAAGCAAAAGGTTACTATTCTAACTTAATTAATTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(169-437)

ABC transporter (ABC_tran)

(500-650)

Peptidase C39 family (Peptidase_C39)

(8-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis SK321

53.631

100

0.536
  comA Streptococcus mitis NCTC 12261

53.492

100

0.535
  comA Streptococcus gordonii str. Challis substr. CH1

53.352

100

0.534
  comA Streptococcus pneumoniae R6

53.073

100

0.531
  comA Streptococcus pneumoniae Rx1

53.073

100

0.531
  comA Streptococcus pneumoniae D39

53.073

100

0.531
  comA Streptococcus pneumoniae TIGR4

52.793

100

0.528
  comA/nlmT Streptococcus mutans UA159

49.167

100

0.494

Multiple sequence alignment