Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   F9277_RS16875 Genome accession   NZ_CP045070
Coordinates   3444336..3445859 (-) Length   507 a.a.
NCBI ID   WP_005451005.1    Uniprot ID   A0A9X3RXA3
Organism   Vibrio harveyi strain WXL538     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3439336..3450859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F9277_RS16850 (F9277_16850) - 3439685..3440671 (+) 987 WP_152163866.1 serine/threonine protein kinase -
  F9277_RS16855 (F9277_16855) - 3440706..3441308 (+) 603 WP_005451000.1 thiol:disulfide interchange protein DsbA/DsbL -
  F9277_RS16860 (F9277_16860) - 3441351..3442229 (-) 879 WP_005451002.1 acyltransferase -
  F9277_RS16865 (F9277_16865) - 3442394..3443350 (+) 957 WP_017190999.1 DUF2860 domain-containing protein -
  F9277_RS16870 (F9277_16870) - 3443500..3444333 (+) 834 WP_005451004.1 GGDEF domain-containing protein -
  F9277_RS16875 (F9277_16875) comM 3444336..3445859 (-) 1524 WP_005451005.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  F9277_RS16880 (F9277_16880) ilvG 3446322..3447968 (+) 1647 WP_152163771.1 acetolactate synthase 2 catalytic subunit -
  F9277_RS16885 (F9277_16885) ilvM 3447980..3448264 (+) 285 WP_005440786.1 acetolactate synthase 2 small subunit -
  F9277_RS16890 (F9277_16890) ilvE 3448277..3449215 (+) 939 WP_005451015.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54966.94 Da        Isoelectric Point: 9.2602

>NTDB_id=391687 F9277_RS16875 WP_005451005.1 3444336..3445859(-) (comM) [Vibrio harveyi strain WXL538]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIVNSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATDKLKNYEFVGELALSGGLRPVKGVLPAALAANKKQRRLVVPHANGDQAALVGKEQHKSAQSL
LEVCAELCGQHQLNLYQTPKKKETKTHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASVASLTQSEINEHNWKTRPFRAPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARTNPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLSEGGDR
GEPTAAVKERVNQARNDMLNRSGKVNALLGSREIEAFCPLQKSDAEFLENALHRLGLSIRAYHRIIKVARTIADLEGSPQ
IERTHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=391687 F9277_RS16875 WP_005451005.1 3444336..3445859(-) (comM) [Vibrio harveyi strain WXL538]
ATGGGGCTGGCAATCATTCATAGTCGAGCAAGTGTGGGTGTGCAAGCGCCGTCGGTAAGCGTGGAAGTCCACATCAGCAA
TGGGATGCCGGGGTTTACGCTGGTGGGTCTACCGGAAACCACAGTAAAAGAATCGAAAGATCGTGTCCGAAGTGCGATCG
TTAATTCCAACTTTCAGTTCCCAGCAAAACGAATTACGGTCAATTTGGCTCCTGCTGACTTGCCCAAAGAAGGTGGGCGC
TTTGATCTGCCGATTGCATTAGGGATTTTGGCTGCTTCAGAACAAATCGCGACAGATAAGCTCAAAAACTACGAATTTGT
TGGTGAATTAGCCCTTTCTGGAGGGCTGAGACCTGTAAAAGGCGTGCTACCTGCTGCGTTGGCTGCGAACAAAAAACAGC
GTCGTTTAGTGGTGCCTCATGCGAATGGTGATCAAGCGGCATTAGTGGGGAAAGAGCAGCATAAATCAGCCCAATCGTTA
CTGGAAGTGTGTGCTGAGCTTTGTGGTCAGCATCAATTGAATTTATATCAAACCCCGAAGAAAAAAGAGACCAAAACGCA
CGGTCGTGATTTACAAGACATCATTGGTCAACAACAAGGTAAACGCGCTTTAGAAATTGCTGCGGCTGGCAATCACAACC
TACTTTTTCTTGGCCCTCCTGGTACAGGTAAAACCATGTTAGCATCACGGCTATGTGATTTATTGCCAGAGATGAGCGAT
GAAGAAGCCATGGAAACCGCTTCTGTGGCGTCGCTGACTCAAAGTGAAATCAATGAACACAATTGGAAAACGCGACCGTT
CCGCGCTCCGCACCATTCCAGCTCAATGGCTGCTTTAGTCGGAGGTGGCTCAGTACCAAGACCGGGCGAGATATCTCTAG
CCCATAATGGGTTGTTGTTTTTAGATGAGATGCCGGAGTTTGACCGTAAGGTGCTCGATTCTTTGCGAGAGCCTTTGGAG
TCAGGAGAAATTATTATCTCTAGAGCGCAAGGTAAAACGCGCTTTCCTGCTCGATTCCAATTGGTTGGTGCATTAAACCC
CAGTCCGACAGGATATTATGAAGGGAATCAAGCACGGACGAATCCACAAGCTATTTTGCGCTACCTTGGACGTTTATCAG
GTCCGCTTCTAGATCGTTTTGACATGTCGCTGGAAATTCCTGCTCTGCCGAAAGGCACATTATCTGAAGGGGGCGATCGA
GGGGAACCAACAGCGGCGGTCAAGGAACGAGTAAATCAAGCACGCAATGATATGCTCAATCGCAGCGGTAAGGTTAATGC
ACTGTTGGGCAGTCGAGAGATTGAAGCGTTTTGCCCGCTACAAAAAAGCGATGCCGAGTTTCTAGAGAACGCTTTGCACC
GCTTGGGATTGTCGATTCGCGCGTATCACCGCATCATCAAAGTTGCGCGTACTATCGCTGATCTGGAAGGTTCACCACAA
ATTGAACGAACTCACCTTGCTGAAGCATTGGGGTATCGAGCGATGGATAGATTACTCAAACAGTTGACGGCGCAGGCAGT
ATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

98.225

100

0.982
  comM Vibrio cholerae strain A1552

85.207

100

0.852
  comM Haemophilus influenzae Rd KW20

66.075

100

0.661
  comM Glaesserella parasuis strain SC1401

64.314

100

0.647
  comM Legionella pneumophila str. Paris

50

98.225

0.491
  comM Legionella pneumophila strain ERS1305867

50

98.225

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.118

100

0.444

Multiple sequence alignment