Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   PAM18_RS02070 Genome accession   NC_017548
Coordinates   443617..443982 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa M18     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 438617..448982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PAM18_RS02040 (PAM18_0403) pyrR 439239..439751 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  PAM18_RS02045 (PAM18_0404) ruvX 439863..440297 (-) 435 WP_003121753.1 Holliday junction resolvase RuvX -
  PAM18_RS02050 (PAM18_0405) - 440297..440866 (-) 570 WP_003100947.1 YqgE/AlgH family protein -
  PAM18_RS02055 (PAM18_0406) - 440915..441808 (-) 894 WP_003160914.1 energy transducer TonB -
  PAM18_RS02060 (PAM18_0407) gshB 441955..442908 (-) 954 WP_014602389.1 glutathione synthase -
  PAM18_RS02065 (PAM18_0408) pilG 443163..443570 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  PAM18_RS02070 (PAM18_0409) pilH 443617..443982 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  PAM18_RS02075 (PAM18_0410) - 444033..444569 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  PAM18_RS02080 (PAM18_0411) pilJ 444654..446702 (+) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  PAM18_RS02085 (PAM18_0412) pilK 446763..447638 (+) 876 WP_003100938.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=39157 PAM18_RS02070 WP_003084587.1 443617..443982(+) (pilH) [Pseudomonas aeruginosa M18]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=39157 PAM18_RS02070 WP_003084587.1 443617..443982(+) (pilH) [Pseudomonas aeruginosa M18]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364

Multiple sequence alignment