Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PSM_RS00700 Genome accession   NC_014803
Coordinates   148359..149870 (+) Length   503 a.a.
NCBI ID   WP_013463762.1    Uniprot ID   A0AA37S2K2
Organism   Pseudoalteromonas sp. SM9913     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 143359..154870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSM_RS00660 (PSM_A0130) - 143532..144158 (+) 627 WP_013463757.1 dUTP diphosphatase -
  PSM_RS00665 (PSM_A0131) yrfG 144426..145073 (-) 648 WP_013463758.1 GMP/IMP nucleotidase -
  PSM_RS00670 (PSM_A0132) nudE 145360..145932 (+) 573 WP_024601288.1 ADP compounds hydrolase NudE -
  PSM_RS00675 (PSM_A0133) cysQ 145925..146722 (+) 798 WP_013463760.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  PSM_RS00695 (PSM_A0134) - 147710..148324 (+) 615 WP_013463761.1 trimeric intracellular cation channel family protein -
  PSM_RS00700 (PSM_A0135) comM 148359..149870 (+) 1512 WP_013463762.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PSM_RS00705 (PSM_A0136) - 149867..150571 (-) 705 WP_013463763.1 response regulator transcription factor -
  PSM_RS00710 (PSM_A0137) - 150737..153229 (-) 2493 WP_013463764.1 prolyl oligopeptidase family serine peptidase -
  PSM_RS00715 (PSM_A0138) - 153314..154381 (+) 1068 WP_013463765.1 hemolysin family protein -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 55066.14 Da        Isoelectric Point: 6.8719

>NTDB_id=39146 PSM_RS00700 WP_013463762.1 148359..149870(+) (comM) [Pseudoalteromonas sp. SM9913]
MSLARIFSRAQVGINAPEVMVEVHLGNGLPAFHIVGLPEASVKEAKDRVRSALENSQFGFPDQRITVNLAPADLPKDGGR
FDLAIAVGILVASGQIVCPDIHKYEFYGELALNGEIRAVNAILPSVLGAKEQNRCCFLPLENDSLASLVSGVKRKAVSSI
QEVWGDLLNQQPLPLNIAYPDCTQAPDFLLDLSDVKGQPGAKRVLEIAAAGGHNLLFLGPPGTGKSMLAQRMSTIMPTMS
DDEAIDTAALYSIIGHSIDLTNWRQRPFRNPHHTCSAVALVGGSSNPKPGEISLAHNGVLFLDELPEFERKVLDSLREPM
ETGTVTISRAARQMEFPAQFQLIAALNPSPTGCHHDKRATPDQVMRYLSRVSGPFIDRIDLQIELPRLSSVELQSTTAEE
TSAEVRARVEAAYAIQLKRQGKVNARLNNKEMSLYCELPAAELQFLARASEKLALSPRSYHRVIKVARTISDLKGAPQIS
LNELKEALNYRAFERLLSQLTQY

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=39146 PSM_RS00700 WP_013463762.1 148359..149870(+) (comM) [Pseudoalteromonas sp. SM9913]
ATGTCGTTAGCCCGTATATTTTCTCGCGCACAAGTAGGAATTAATGCCCCCGAGGTTATGGTTGAAGTGCATTTAGGGAA
TGGTTTACCTGCATTTCATATTGTCGGCTTACCCGAAGCATCGGTTAAAGAGGCCAAGGATAGAGTACGCAGCGCCCTTG
AAAACTCTCAATTTGGATTTCCCGATCAACGTATCACCGTTAATTTAGCACCTGCCGATTTACCAAAAGACGGCGGGCGG
TTTGACCTTGCGATTGCGGTAGGCATTTTGGTCGCATCGGGGCAAATAGTCTGCCCTGATATTCATAAGTATGAGTTTTA
TGGTGAGCTTGCACTTAATGGTGAAATACGTGCAGTGAATGCTATTTTACCCTCAGTGCTCGGGGCTAAAGAGCAAAACC
GTTGTTGCTTTCTTCCTCTTGAAAACGATAGTTTGGCCAGCCTTGTCAGCGGTGTAAAACGAAAAGCGGTAAGCTCTATA
CAAGAGGTGTGGGGAGACTTACTCAACCAACAACCTTTACCATTGAATATTGCCTACCCTGACTGTACCCAAGCGCCAGA
CTTTTTACTCGATTTAAGTGATGTAAAAGGCCAACCCGGTGCTAAACGAGTACTAGAAATTGCTGCCGCAGGTGGACATA
ACCTACTATTTTTAGGGCCACCAGGAACCGGCAAATCAATGCTTGCGCAACGAATGTCTACAATAATGCCAACCATGTCA
GATGATGAAGCCATTGATACTGCTGCTTTGTATTCCATTATTGGCCACTCAATCGATTTAACCAATTGGCGTCAGCGACC
ATTTCGAAATCCTCATCACACTTGCTCTGCAGTTGCGCTGGTAGGCGGTTCGTCTAACCCTAAACCCGGTGAAATATCGT
TAGCGCACAATGGCGTATTATTTTTAGATGAGCTGCCTGAATTTGAGCGCAAAGTACTGGACTCGTTACGAGAACCCATG
GAAACCGGAACCGTGACGATTTCGCGCGCGGCAAGACAAATGGAATTTCCGGCACAGTTTCAGCTTATTGCAGCACTTAA
TCCCAGCCCGACAGGGTGCCATCATGATAAACGGGCGACCCCTGATCAAGTGATGCGTTATTTATCGCGGGTATCGGGAC
CGTTTATCGATAGAATTGATTTGCAAATTGAGCTCCCTAGACTAAGCAGCGTGGAGCTACAAAGTACGACTGCAGAAGAA
ACCAGTGCTGAAGTGAGAGCGCGAGTAGAAGCGGCTTATGCAATACAATTAAAACGCCAAGGTAAAGTGAATGCGCGGCT
AAATAACAAGGAAATGAGCTTATACTGCGAGTTACCCGCTGCGGAGCTACAGTTTTTAGCTAGAGCCAGTGAAAAGCTGG
CGTTATCGCCGCGCTCTTATCATAGAGTGATAAAAGTAGCGCGTACCATTAGTGATTTAAAGGGCGCGCCACAAATTAGT
TTAAATGAGCTTAAAGAAGCGCTTAATTATCGGGCGTTTGAGCGTTTATTATCGCAGTTAACCCAATACTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(399-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.754

100

0.559
  comM Haemophilus influenzae Rd KW20

54.134

100

0.547
  comM Glaesserella parasuis strain SC1401

53.755

100

0.541
  comM Vibrio campbellii strain DS40M4

53.968

100

0.541
  comM Legionella pneumophila str. Paris

50.302

98.807

0.497
  comM Legionella pneumophila strain ERS1305867

50.302

98.807

0.497
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.095

100

0.423

Multiple sequence alignment