Detailed information NTG0039107

Bioinformatically predicted

Overview

• Name: dprA
• Type: Machinery gene
• Locus tag: OCEPR_RS00305
• Genome accession: NC_014761
• Coordinates: 58513..59538 (-)
• Length: 341 a.a.
• NCBI ID: WP_013456700.1
• Uniprot ID: -
• Organism: Oceanithermus profundus DSM 14977
• Function: ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing

Genomic Context

Location: 53513..64538

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCEPR_RS00280 (Ocepr_0061)	-	53906..54880 (-)	975	WP_013456695.1	tripartite tricarboxylate transporter substrate binding protein	-
OCEPR_RS00285 (Ocepr_0062)	-	54983..55879 (-)	897	WP_013456696.1	cation diffusion facilitator family transporter	-
OCEPR_RS00290 (Ocepr_0063)	dusA	55876..56841 (-)	966	WP_013456697.1	tRNA dihydrouridine(20/20a) synthase DusA	-
OCEPR_RS00295 (Ocepr_0064)	ispH	56843..57844 (-)	1002	WP_013456698.1	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	-
OCEPR_RS00300 (Ocepr_0065)	-	57857..58504 (-)	648	WP_013456699.1	O-methyltransferase	-
OCEPR_RS00305 (Ocepr_0066)	dprA	58513..59538 (-)	1026	WP_013456700.1	DNA-processing protein DprA	Machinery gene
OCEPR_RS00310 (Ocepr_0067)	-	59770..60135 (+)	366	WP_013456701.1	hypothetical protein	-
OCEPR_RS12090 (Ocepr_0068)	-	60132..61085 (-)	954	WP_013456702.1	TIGR00341 family protein	-
OCEPR_RS00320 (Ocepr_0069)	-	61109..61810 (+)	702	WP_013456703.1	pseudouridine synthase	-
OCEPR_RS00325 (Ocepr_0070)	-	61807..62853 (-)	1047	WP_013456704.1	nucleoside 2-deoxyribosyltransferase	-
OCEPR_RS12095 (Ocepr_0071)	-	62850..63371 (-)	522	WP_013456705.1	DMT family transporter	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 35050.06 Da
• Isoelectric Point: 5.2787

>NTDB_id=39107 OCEPR_RS00305 WP_013456700.1 58513..59538(-) (dprA) [Oceanithermus profundus DSM 14977]
MSWLALALTPGVGPARFLKVFAEGEDGLERVGELLGVELERAYRRVLDAGGAERVKERAAVLGVRPVGLWEADYPPTLRH
LADPPPLVYLKGGWSGGRPAVAVVGSRKAQPWALDFSERLARSLAGSGVAVVSGLARGVDTAAHRGALAGGGPTLAVLGS
GVDVVYPPENAELAGRVTLMSELPLGSGPSAGSFPRRNRLIAALADAVVIVQAPEKSGALITAALAAELGREVLAVPGRP
SDWASRGSNRLLADGAAVVQAPEDVLEALGIGGAAPRPDRPEPEGAAGALWEALRRRGEALPDDLALDLNLGAAEVLGLL
TQLELSGHVRALPGGRYEAVG

Nucleotide

• Length: 1026 bp

>NTDB_id=39107 OCEPR_RS00305 WP_013456700.1 58513..59538(-) (dprA) [Oceanithermus profundus DSM 14977]
ATGTCCTGGTTGGCCCTGGCGCTTACCCCCGGCGTGGGGCCGGCGCGCTTCCTCAAGGTCTTCGCGGAGGGCGAGGATGG
CCTGGAGCGGGTGGGCGAGCTGCTGGGCGTCGAGCTGGAGCGCGCCTACCGGCGGGTGCTCGATGCGGGCGGGGCCGAAC
GCGTGAAGGAGCGGGCGGCGGTGCTGGGCGTGCGGCCGGTGGGCCTGTGGGAGGCCGACTACCCGCCCACGCTGCGCCAC
CTCGCCGACCCCCCGCCGCTCGTCTACCTGAAGGGCGGCTGGAGCGGCGGCCGTCCGGCGGTCGCGGTGGTGGGCAGCCG
CAAGGCCCAGCCCTGGGCGCTCGACTTCAGCGAGCGGCTCGCCCGCAGTTTGGCCGGGTCCGGCGTGGCCGTGGTCAGCG
GGCTGGCGCGGGGCGTGGACACCGCCGCCCACCGGGGCGCGCTCGCCGGCGGGGGGCCGACGCTCGCGGTGCTGGGGAGC
GGAGTGGACGTCGTCTACCCGCCCGAGAACGCCGAGCTGGCCGGGCGGGTGACCCTGATGAGCGAGCTGCCGCTGGGCAG
CGGGCCCAGCGCCGGCAGCTTTCCCCGCCGCAACCGGCTCATCGCCGCGCTGGCCGACGCGGTGGTGATCGTGCAGGCGC
CCGAGAAGTCGGGGGCTTTGATCACCGCGGCGCTGGCCGCCGAGCTGGGGCGCGAGGTGCTGGCGGTTCCGGGCCGGCCC
TCCGACTGGGCCAGCCGCGGCAGCAACCGGCTGCTCGCCGACGGCGCGGCGGTGGTGCAGGCGCCGGAGGACGTGCTCGA
GGCCCTGGGAATCGGCGGGGCCGCGCCGCGCCCTGACCGGCCGGAACCCGAAGGGGCCGCGGGGGCGCTCTGGGAGGCGC
TGCGCCGCCGCGGCGAGGCCCTGCCCGACGACCTGGCGCTCGACCTGAACCTGGGGGCGGCCGAGGTGTTGGGGCTGCTG
ACCCAGCTCGAGCTCTCGGGGCACGTGCGGGCGCTGCCGGGCGGGCGCTACGAGGCCGTGGGGTAG

Domains

Predicted by InterproScan.

• DprA winged helix domain (DprA_WH) (275-335)

• DNA recombination-mediator protein A (DNA_processg_A) (63-260)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
dprA	Thermus thermophilus HB27	53.666	100	0.537
dprA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	40.282	100	0.419
dprA	Neisseria meningitidis strain C311	35.806	100	0.411
dprA	Neisseria meningitidis MC58	35.806	100	0.411
dprA	Neisseria gonorrhoeae MS11	35.733	100	0.408
dprA	Neisseria gonorrhoeae strain FA1090	34.961	100	0.399
dprA	Vibrio campbellii strain DS40M4	36.842	100	0.39