Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   F8A90_RS16590 Genome accession   NZ_CP044522
Coordinates   4000704..4001360 (-) Length   218 a.a.
NCBI ID   WP_200018067.1    Uniprot ID   -
Organism   Cobetia sp. cqz5-12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3995704..4006360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F8A90_RS16575 (F8A90_16565) - 3996035..3996754 (-) 720 WP_200018065.1 lysophospholipid acyltransferase family protein -
  F8A90_RS16580 (F8A90_16570) - 3996815..3997699 (-) 885 WP_166020056.1 sugar nucleotide-binding protein -
  F8A90_RS16585 (F8A90_16575) - 3997762..4000269 (-) 2508 WP_200018066.1 EAL domain-containing protein -
  F8A90_RS16590 (F8A90_16580) ssb 4000704..4001360 (-) 657 WP_200018067.1 single-stranded DNA-binding protein Machinery gene
  F8A90_RS16595 (F8A90_16585) - 4001448..4002863 (-) 1416 WP_200018069.1 MFS transporter -
  F8A90_RS16600 (F8A90_16590) uvrA 4003071..4005959 (+) 2889 WP_200018075.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23570.58 Da        Isoelectric Point: 5.2339

>NTDB_id=390830 F8A90_RS16590 WP_200018067.1 4000704..4001360(-) (ssb) [Cobetia sp. cqz5-12]
MARGVNKVILIGNLGQDPEVRFTPSGSAVCNLNLATTDTWNDRQSGQRQERTEWHRVVMFNKLAEVAQQYVKKGSRLYIE
GRLQTRKWQDQNGNDRYSTEIVANDMQMLDTRGEGGGGNFAGGRPQQAPQQGGQQPAAAPQQGGQFGAQQPAPQQGGQFG
GQQPAPQQGGQFGGQQPAPQQGNNFGGQQPAQQNNSQNNNFGAPPAGSFDDFDDEIPF

Nucleotide


Download         Length: 657 bp        

>NTDB_id=390830 F8A90_RS16590 WP_200018067.1 4000704..4001360(-) (ssb) [Cobetia sp. cqz5-12]
ATGGCTCGTGGCGTAAACAAGGTCATTCTGATCGGTAATCTCGGTCAAGACCCGGAAGTTCGCTTCACCCCGTCCGGTAG
TGCGGTGTGCAACCTGAACCTCGCGACGACGGACACCTGGAACGATCGCCAGAGCGGTCAGCGTCAGGAACGTACCGAAT
GGCACCGTGTGGTGATGTTCAACAAGCTGGCTGAAGTGGCCCAGCAATACGTCAAGAAAGGCTCCCGCCTGTATATTGAA
GGCCGCCTGCAGACGCGCAAGTGGCAGGATCAGAACGGCAATGACCGTTACAGCACGGAAATCGTGGCCAACGACATGCA
GATGCTGGATACGCGTGGGGAAGGTGGCGGCGGCAACTTCGCTGGCGGTCGCCCGCAGCAGGCGCCTCAGCAGGGCGGCC
AGCAACCGGCCGCAGCTCCCCAGCAAGGTGGCCAGTTCGGTGCTCAGCAGCCGGCTCCGCAGCAAGGTGGCCAGTTCGGT
GGTCAGCAGCCGGCCCCTCAGCAAGGCGGTCAGTTCGGTGGTCAGCAGCCGGCACCCCAGCAGGGCAACAACTTCGGTGG
CCAGCAGCCTGCCCAGCAGAACAACTCCCAGAACAACAATTTCGGTGCGCCGCCCGCAGGCAGCTTCGATGATTTCGATG
ATGAAATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.091

100

0.495
  ssb Glaesserella parasuis strain SC1401

44.091

100

0.445
  ssb Neisseria meningitidis MC58

43.056

99.083

0.427
  ssb Neisseria gonorrhoeae MS11

42.791

98.624

0.422

Multiple sequence alignment