Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   F8A90_RS00355 Genome accession   NZ_CP044522
Coordinates   78535..80079 (+) Length   514 a.a.
NCBI ID   WP_166019070.1    Uniprot ID   -
Organism   Cobetia sp. cqz5-12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 73535..85079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F8A90_RS00330 (F8A90_00330) glnK 74093..74431 (-) 339 WP_024951507.1 P-II family nitrogen regulator -
  F8A90_RS00335 (F8A90_00335) - 74581..75828 (-) 1248 WP_166019072.1 ammonium transporter -
  F8A90_RS00340 (F8A90_00340) - 75860..76198 (-) 339 WP_043331582.1 P-II family nitrogen regulator -
  F8A90_RS00345 (F8A90_00345) - 76636..77010 (+) 375 WP_166019071.1 accessory factor UbiK family protein -
  F8A90_RS00350 (F8A90_00350) - 77104..77382 (-) 279 WP_200018369.1 hypothetical protein -
  F8A90_RS00355 (F8A90_00355) comM 78535..80079 (+) 1545 WP_166019070.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  F8A90_RS00360 (F8A90_00360) - 80116..81174 (-) 1059 WP_200018371.1 DUF4105 domain-containing protein -
  F8A90_RS00365 (F8A90_00365) - 81199..82350 (-) 1152 WP_200018379.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  F8A90_RS00370 (F8A90_00370) - 82436..82963 (-) 528 WP_200018380.1 hypothetical protein -
  F8A90_RS00375 (F8A90_00375) - 82960..83898 (-) 939 WP_233593615.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 54938.30 Da        Isoelectric Point: 7.4753

>NTDB_id=390814 F8A90_RS00355 WP_166019070.1 78535..80079(+) (comM) [Cobetia sp. cqz5-12]
MSLAMLRTRASLGLEAPEVQVEVHLSNGLPGLSIVGLPEAAVKESRERVRSALLNAGFEFPARRITLNLAPADLPKEGGR
FDLPIALGILVASGQIPEEAVAAMECLGELALDGSIRAVTGVLPAALCCRKAGRTLVVPRGNADEAALAEELEVLAVGHL
LELVAHLLGRERLTPHVCSIIPQARLPEPDLSEVRGQHQARRALEIAAAGGHNLLFAGPPGTGKTMLASRLSGILPPLGE
GEALEVAAVRSVCGLPIMERWGQRPFRAPHHTASGVALVGGGSKPRPGEVSLAHHGVLFLDELAEFDRGVLEVMREPLES
GRILISRASHQRRFPARFQLVAAMNPCPCGYLGDSRRNCSCTPAQIQRYQARLSGPLLDRIDLQVEVPGLPAEELTSATP
GEASAGVRERVLAARARQLARGGLNAHLDTHALEAACQLEDGERQWLAGVLSRLNLSARAYHRVLRVALTLSDLIDQDGV
QRPQLMEAIGYRQLDRMMGRDPARPGASAQQRSA

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=390814 F8A90_RS00355 WP_166019070.1 78535..80079(+) (comM) [Cobetia sp. cqz5-12]
ATGTCATTGGCAATGTTGCGCACGCGCGCGTCACTTGGTCTCGAGGCACCGGAAGTTCAGGTGGAGGTACACCTCTCCAA
CGGCTTGCCGGGTCTGTCCATCGTCGGCTTGCCGGAAGCGGCGGTGAAGGAGAGTCGCGAGCGGGTGCGCAGTGCGCTGC
TCAATGCCGGCTTCGAATTTCCGGCGCGCCGTATCACGCTCAATCTGGCGCCAGCGGACCTCCCCAAGGAAGGCGGTCGC
TTCGATCTGCCGATTGCGCTGGGGATTCTGGTCGCCTCCGGGCAGATACCGGAAGAGGCCGTGGCAGCGATGGAGTGCCT
CGGCGAGCTGGCGCTCGATGGCAGCATCCGTGCCGTCACCGGCGTGCTGCCAGCCGCACTCTGTTGTCGCAAGGCGGGGC
GGACGCTGGTGGTACCGCGCGGCAATGCCGACGAGGCGGCGCTCGCCGAGGAGTTGGAGGTATTGGCGGTGGGCCATCTG
CTGGAGTTGGTGGCCCACCTGCTGGGGCGCGAGCGCCTCACGCCGCATGTGTGCTCGATCATCCCCCAGGCGCGTCTGCC
GGAGCCCGACCTGAGCGAAGTGCGTGGCCAGCATCAGGCGCGCAGGGCATTGGAGATCGCCGCGGCCGGCGGTCACAACC
TGCTATTTGCTGGCCCGCCGGGCACCGGCAAGACGATGCTGGCCAGTCGCCTGTCCGGCATCCTGCCGCCACTGGGCGAG
GGAGAAGCGTTGGAAGTCGCTGCGGTGCGCTCGGTATGTGGTCTGCCGATCATGGAGCGCTGGGGCCAGCGGCCATTCCG
TGCTCCGCACCATACGGCCAGTGGGGTCGCGCTGGTGGGCGGTGGCTCCAAGCCGCGCCCGGGCGAGGTGTCGCTGGCGC
ATCATGGCGTGCTGTTTCTGGATGAGCTGGCGGAGTTCGACCGCGGCGTGCTCGAAGTGATGCGCGAGCCGCTGGAGAGC
GGTCGTATTCTGATCTCGCGCGCCAGCCATCAACGCCGTTTCCCGGCGCGCTTCCAGCTGGTCGCGGCGATGAATCCCTG
CCCCTGCGGCTACCTCGGTGACAGTCGCCGCAATTGCAGCTGCACGCCGGCGCAGATCCAGCGCTATCAGGCGCGTCTGT
CCGGCCCGTTGCTGGACCGTATCGACCTGCAGGTCGAGGTGCCGGGCCTGCCCGCCGAGGAGTTGACGTCCGCCACTCCT
GGCGAGGCCTCGGCCGGCGTGCGCGAACGGGTGCTGGCAGCCCGCGCGCGCCAATTGGCACGCGGCGGCCTGAATGCCCA
TCTGGATACCCACGCGCTGGAAGCCGCCTGTCAGCTGGAAGACGGCGAGCGCCAGTGGCTGGCCGGCGTACTGTCACGGC
TCAATCTCTCGGCGCGCGCCTATCACCGGGTGCTGCGTGTCGCGCTGACACTGAGTGATCTGATCGACCAGGACGGTGTG
CAGCGGCCCCAGCTGATGGAGGCCATCGGTTATCGCCAGCTGGACCGCATGATGGGCAGGGACCCGGCTCGCCCGGGTGC
TAGCGCCCAGCAGCGCAGCGCCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.09

97.471

0.537
  comM Vibrio campbellii strain DS40M4

54.781

97.665

0.535
  comM Glaesserella parasuis strain SC1401

53.543

98.833

0.529
  comM Haemophilus influenzae Rd KW20

52.849

99.027

0.523
  comM Legionella pneumophila str. Paris

51.186

98.444

0.504
  comM Legionella pneumophila strain ERS1305867

51.186

98.444

0.504
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.968

96.498

0.444

Multiple sequence alignment