Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   F7R97_RS01090 Genome accession   NZ_CP044517
Coordinates   236005..237492 (-) Length   495 a.a.
NCBI ID   WP_140952779.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 31FS3-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 231005..242492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7R97_RS18800 - 231684..231854 (+) 171 WP_171519573.1 hypothetical protein -
  F7R97_RS01070 (F7R97_01080) - 231911..232732 (+) 822 WP_000975215.1 TorF family putative porin -
  F7R97_RS01075 (F7R97_01085) - 232775..233653 (-) 879 WP_000772972.1 dihydrodipicolinate synthase family protein -
  F7R97_RS01080 (F7R97_01090) - 233669..234445 (-) 777 WP_000845026.1 aldolase -
  F7R97_RS01085 (F7R97_01095) - 234557..235990 (+) 1434 WP_005112471.1 PLP-dependent aminotransferase family protein -
  F7R97_RS01090 (F7R97_01100) comM 236005..237492 (-) 1488 WP_140952779.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  F7R97_RS01095 (F7R97_01105) - 237558..237785 (-) 228 WP_000894500.1 accessory factor UbiK family protein -
  F7R97_RS01100 (F7R97_01110) glnK 238065..238403 (+) 339 WP_000780326.1 P-II family nitrogen regulator -
  F7R97_RS01105 (F7R97_01115) - 238461..239858 (+) 1398 WP_000738520.1 ammonium transporter -
  F7R97_RS01110 (F7R97_01120) nrdR 240017..240475 (+) 459 WP_000543541.1 transcriptional regulator NrdR -
  F7R97_RS01115 (F7R97_01125) ribD 240491..241576 (+) 1086 WP_001292524.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54527.41 Da        Isoelectric Point: 7.2753

>NTDB_id=390722 F7R97_RS01090 WP_140952779.1 236005..237492(-) (comM) [Acinetobacter baumannii strain 31FS3-2]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPENCTEDFEFIGELALDGHVRPVSGALTLAMACQQAQHKIVLPVDNSQDISHLPNLECYPVNHL
KEVCEHFLGTQKLAHAQPSAHSNEMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLST
QETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGSSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE
DSTTVRQRVIYAYEQQMQRQDCLNQALSPKQLEQHAVLDSTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEVIQ
SPHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=390722 F7R97_RS01090 WP_140952779.1 236005..237492(-) (comM) [Acinetobacter baumannii strain 31FS3-2]
ATGTCTTTTTCTAAAATTTATACTCGGGGACTTTTAGGATTACATGCGCCTCTCATTGAGGTTGAGGTGCATGTGAGTCA
AGGCTTACCCTCTCTGACTATTGTAGGCTTAGCTGAAGCAGCAGTTAGGGAAAGTAAGGATAGGGTTCGCTCAGCTATTA
TTAACAGTGGATTTCAATTTCCAACTAAGCGGCTGACCATTAACCTTGCTCCTGCAGATTTGCCCAAAGATGGTTCACGG
CTAGATTTACCAATTGCTTTAGGCATCTTAATTGCCTCTGGTCAACTTCCGGAAAACTGCACAGAAGACTTTGAATTTAT
TGGAGAGTTGGCTCTAGACGGTCATGTAAGACCTGTGTCAGGCGCCTTAACTTTAGCAATGGCATGCCAGCAAGCTCAGC
ATAAAATCGTTTTACCAGTCGATAATAGCCAAGATATTAGCCATTTACCTAATCTTGAGTGTTATCCGGTTAATCATTTA
AAAGAGGTGTGCGAGCACTTTTTAGGCACACAAAAGCTAGCTCACGCACAGCCAAGTGCCCATTCAAATGAAATGCCCTA
TAAATTTGATCTTGCAGATGTTAAAGGTCAGCTACGCCCACGGCGTGCACTAGAAATTGCTGCCGCTGGGGGACATTCCC
TGCTCTTTAAAGGACCACCAGGCACAGGTAAAACTTTATTGGCCTCACGCCTGCCTTCCATTTTACCGCCACTTTCTACT
CAAGAAACTCTTGAAGTTGCAAGTATTTATTCTATTTCAAATACACCACATACTTTTGGGCAGCGTCCATTTCGCGCGCC
CCACCATACAGCATCAGCAATTGCACTGGTTGGGGGCAGTTCACACCCTAAACCAGGTGAAATTACTTTATCTCATTTAG
GTGTTCTATTTTTAGATGAACTTCCCGAGTTTGACAGAAAGGTTCTAGAAGTCTTACGCCAACCGCTTGAGTCAAAAGAA
ATCATTATTTCACGTGCGGCTCGGCAAATTACTTATCCTGCGAACTTTCAGCTCATTGCAGCAATGAATCCTTGTCCATG
TGGGTATGCATTTAATCAAGATAGCCGTTGTCAGTGTTCTCCAGAAAGCATTAAGCGCTATCAAAACCGTATATCGGGAC
CGTTACTCGATCGTATCGATTTACATATTGATGTACCGCCATTAAAAGCTCAAGAACTGCAAGACCCAACACCTGCAGAA
GATTCTACCACTGTACGACAACGTGTGATTTATGCTTATGAACAACAAATGCAAAGACAGGATTGTTTGAATCAGGCGCT
CTCACCCAAACAACTGGAACAACATGCTGTTCTCGATAGTACTTCACAGCGAATGATTGAAATGGCTCAGCAACGTTTAA
ATTTATCTGCTCGTGCTTATCATCGTGTTTTACGGGTTGCTCGTACTATTGCCGATTTGGCCCAAAGTGAGGTCATTCAA
AGTCCTCATCTTACAGAAGCACTCTCTTATCGAGGTAATCACTCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.008

100

0.511
  comM Glaesserella parasuis strain SC1401

50.1

100

0.505
  comM Haemophilus influenzae Rd KW20

49.299

100

0.497
  comM Legionella pneumophila strain ERS1305867

48.996

100

0.493
  comM Legionella pneumophila str. Paris

48.996

100

0.493
  comM Vibrio campbellii strain DS40M4

48.283

100

0.483
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.4

100

0.469

Multiple sequence alignment